Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03960 ATGAACTCGGAAACTGAAACACCATCCTCAACGACGTCGTTTTGGTGCTATAGCTGTACACGTTTCATTCACATCTTGAACCAAAACGATGTCGTTTGTCCTCACTGCCAAGACGGATTCGTCGAAGAGATTCACGCCGGTCAATCACCGGCGGTTTCTCTTTTCGCCGACGGAATTCCGTCTTCCAGAAGACAAACCTCCCGCCGCAGACGTCGTAACGCCGGCGGCAGCCGTTCGCCTTTTAATCCTGTGATCGTTCTCCGTGGACCTAGAGAAGACACCACCGCCGGCGGAGGTGGCGGTGTTGATAGCGAGAGGAATACAAGTAGTTTTGAATTATACTACGAAGACAGTAACGGCACCGATCTACGTCCACTTCCACCAAGCATGTCGGAGCTATTACTCGGTTCCGGCTTCGATCGGTTACTAGAGCAATTTTCTCAAATCGAAATCAACGGTTTCGGAAGGTCGGAGAATCCACCGGCATCAAAGGCGGCGATAGAGTCAATACCAACAATTGAAATCACCGATTCAGAAATCGAATCCGAAATTCACTGTGCAGTTTGCAAAGAACAATTCGAGCTAGGTTCTGAAGCGCGGAAGATGCCGTGTAATCATCTTTACCATTCCGATTGCATTCTCCCATGGCTTTCAATGCGAAATTCGTGTCCGGTGTGTCGGCACGAGTTACCGTCCGACCAAAACGCGTCGGAGAGTAGAATTTCAGGTCAGATTGATGAAGAAGCGGTTGGATTGACGATATGGAGATTACCGGGAGGTGGATTTGCTGTTGGAAGATTCGCCGGTGGCCGAAGAGCCGGTGAGATTCAGTTACCGATTGTTTACACGGAGATGGATGGTAACAATTCAAACGAAGACTCTAGAAGAATTTCTTTGACTGTCGGAAGTAATAGAGTTAGAGAGAGACGTGGAATTCGGAGAATTTTTCGAAATTTTTTATCGTTTTTTGGGAGCGTTAATTTAAATCGTAGCTTTTCCGGTTCATTGTTTAGTAGAAGTTCAAGAAGAAGAAGCACAACTACTTGGGTTACAGAAGAATAA 1062 0.468 MNSETETPSSTTSFWCYSCTRFIHILNQNDVVCPHCQDGFVEEIHAGQSPAVSLFADGIPSSRRQTSRRRRRNAGGSRSPFNPVIVLRGPREDTTAGGGGGVDSERNTSSFELYYEDSNGTDLRPLPPSMSELLLGSGFDRLLEQFSQIEINGFGRSENPPASKAAIESIPTIEITDSEIESEIHCAVCKEQFELGSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELPSDQNASESRISGQIDEEAVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPIVYTEMDGNNSNEDSRRISLTVGSNRVRERRGIRRIFRNFLSFFGSVNLNRSFSGSLFSRSSRRRSTTTWVTEE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03960 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 233 IPR013083 -
Mepo6g03960 353 Pfam Protein of unknown function (DUF1117) 250 342 IPR010543 -
Mepo6g03960 353 MobiDBLite consensus disorder prediction 55 108 - -
Mepo6g03960 353 FunFam E3 ubiquitin-protein ligase RING1-like 148 233 - -
Mepo6g03960 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 53 231 - -
Mepo6g03960 353 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Mepo6g03960 353 SUPERFAMILY RING/U-box 166 233 - -
Mepo6g03960 353 Pfam Ring finger domain 185 227 IPR001841 -
Mepo6g03960 353 CDD RING-H2_RNF126-like 186 227 - -
Mepo6g03960 353 Pfam zinc-ribbon 12 44 IPR039525 GO:0061630
Mepo6g03960 353 SMART ring_2 186 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03960 Mepo-Chr6 51913730 51915526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03960 122 238 C3H Transcription Factor Family AT5G01980 41.880 1.22e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03960 K11982 - gmx:100804867 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03960 6 51913730 51915526 Mepo2g02092 2 30403352 30405241 PCT