Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03930 ATGGGAGTTTGTTTGAGTGCTCAAATCAAAGCTGAAAGTCCTTTTAACACTGGATTCAATTCAAAGAACTCAAATTCAGCTGGAAATGATCTGAGCAGCAGAAACAGTAAGGTTTCAGCTGCATCAGTGCCTCCGACTCCTCGGAGCGAGGGTGAAATTTTGCAGTCATCAAATTTAAAGAGCTATACCTTAGCTGAACTTAAGTCGGCTACTAGAAATTTTCGACCAGATAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTGTTTAAGGGTTGGATTGATGAGAATACATTGGTTGCTGCCAAACCGGGTACTGGCATAGTTATTGCTGTTAAAAGACTTAATCAAGAAAGCTTCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACACTTTTCTCATCCTCATTTAGTGAGATTGATCGGTTATTGCCTTGAAGATGAACACCGTCTTCTCGTCTATGAGTTTATGCCTCGTGGAAGCTTGGAGAATCACTTGTTCAGGAGAGGATCATATTTTCAACCTCTTTCATGGAGCCTTCGTCTGAAGGTTGCTCTTGACGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAAATAAAGTGATATATAGAGATTTTAAGACTTCAAATATCTTGTTGGATTCCGATTATAATGCAAAGCTTTCTGATTTCGGGCTGGCAAAGGATGGTCCAACAGGTGACAAAAGCCACGTTTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCTACAGGTCATCTTACTACTAAGAGCGATGTCTATAGTTTTGGAGTTGTCCTGCTTGAAATGTTATCCGGTAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACATAGCTTGGTGGAATGGGCTAAACCTTATCTCGCTAACAAACGTAAGGTTTTCAGTGTGTTAGACAGTCGGCTCGAAGGACAGTATTCATCAGATGAGTCCTACAGGGTAGCCACACTTGCTTTGCGATGCCTATCAACAGAATCCAGGTACAGGCCCAACATGGATGAAGTTGTTAGAATTTTGGAGCAGCTCAAGGTTCCTGATGTGAATGTAAATCGTAAGCGTGCTCGGAGAAAAAGTGCTGATGATGTTACCCGTGTGAGGACTCACAAATCTTGTGCTAGTGCCAAGACTCACACATCTTATCCACGTGTCACGTTGTCTCCTCTCTATACTTGA 1224 0.4322 MGVCLSAQIKAESPFNTGFNSKNSNSAGNDLSSRNSKVSAASVPPTPRSEGEILQSSNLKSYTLAELKSATRNFRPDSVLGEGGFGSVFKGWIDENTLVAAKPGTGIVIAVKRLNQESFQGHREWLAEVNYLGHFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAENKVIYRDFKTSNILLDSDYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHSLVEWAKPYLANKRKVFSVLDSRLEGQYSSDESYRVATLALRCLSTESRYRPNMDEVVRILEQLKVPDVNVNRKRARRKSADDVTRVRTHKSCASAKTHTSYPRVTLSPLYT 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03930 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Mepo6g03930 407 PANTHER OS01G0588500 PROTEIN-RELATED 37 360 - -
Mepo6g03930 407 MobiDBLite consensus disorder prediction 16 52 - -
Mepo6g03930 407 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Mepo6g03930 407 SUPERFAMILY Protein kinase-like (PK-like) 48 356 IPR011009 -
Mepo6g03930 407 Gene3D Transferase(Phosphotransferase) domain 1 160 383 - -
Mepo6g03930 407 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo6g03930 407 CDD STKc_IRAK 80 359 - -
Mepo6g03930 407 FunFam Probable serine/threonine-protein kinase PBL8 160 376 - -
Mepo6g03930 407 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Mepo6g03930 407 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Mepo6g03930 407 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03930 Mepo-Chr6 51623311 51626466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03930 20 356 Glycoside Hydrolase AT3G07070 44.928 7.29e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mepo6g03930 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03930 - - gmx:100798404 664.84