Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03910 ATGTCTCAACGAATCGGGACAAAGCTATTTATCAGCAGATTATCGTTTTACACTACACAACAACAATTCGAGTCATTGTTCTCACCATTCGGAGTAATTACAGAAGCTTCGCTTATTATCGACCAAAAAACTCAAAGGCCTAAAGGCTTTGGTTTTGTGTCGTATAAATCTGAAATCGAAGCTGAAAAGGCTAGGAAAGCATTGAATGGAAGGATAGTTGATGGAAGGCTGATTTTCGTTGAACATGCAAAACCGAAGGACCCGTGA 267 0.397 MSQRIGTKLFISRLSFYTTQQQFESLFSPFGVITEASLIIDQKTQRPKGFGFVSYKSEIEAEKARKALNGRIVDGRLIFVEHAKPKDP 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03910 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mepo6g03910 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mepo6g03910 88 SUPERFAMILY RNA-binding domain, RBD 6 87 IPR035979 GO:0003676
Mepo6g03910 88 Gene3D - 2 88 IPR012677 -
Mepo6g03910 88 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 87 - -
Mepo6g03910 88 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 88 - -
Mepo6g03910 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03910 Mepo-Chr6 51393746 51396495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03910 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 40.789 4.23e-12 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03910 - K13195 pcin:129306862 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03910 6 51393746 51396495 Mepo6g03910 6 51393746 51396495 ECH