Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03909 ATGAAGAGAGGCAGAGAAGATAAGAGTGAGTTAAATTGTTTGATGCTACTATCCAAAGTTGGTGAAACCAAAGAGCCTAATACATTGAAAGAATGTGGTTTTAAGTGCAAAACATGCAACAAAGAATTCTCTTCTTTTCAAGCTTTAGGTGGCCATAGAGCAAGTCACAAGAGACCGAAAGTACTCATGTACAAGTTACCAAACATGAAACCAAAGATGCATCCATGCCCTATTTGTGGACTTGAGTTTTCTATTGGACAAGCTCTTGGTGGACACATGAGAAAGCATAATAGTTTTTCCATCTTCAAGAAATCAAAAAAAGATCATTGTGAAAGGTTGAATTTTTGCTTGGACTTGAACTTGACGCCGTTAGAGAATGGCATTGCTTGA 390 0.3744 MKRGREDKSELNCLMLLSKVGETKEPNTLKECGFKCKTCNKEFSSFQALGGHRASHKRPKVLMYKLPNMKPKMHPCPICGLEFSIGQALGGHMRKHNSFSIFKKSKKDHCERLNFCLDLNLTPLENGIA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03909 129 Pfam C2H2-type zinc finger 74 96 - -
Mepo6g03909 129 Pfam C2H2-type zinc finger 34 59 - -
Mepo6g03909 129 SUPERFAMILY beta-beta-alpha zinc fingers 34 96 IPR036236 -
Mepo6g03909 129 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Mepo6g03909 129 Gene3D Classic Zinc Finger 31 96 - -
Mepo6g03909 129 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Mepo6g03909 129 SMART c2h2final6 34 56 IPR013087 -
Mepo6g03909 129 SMART c2h2final6 74 96 IPR013087 -
Mepo6g03909 129 PANTHER ZINC FINGER PROTEIN ZAT5 6 123 - -
Mepo6g03909 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Mepo6g03909 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03909 Mepo-Chr6 51385250 51386182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03909 1 126 C2H2 Transcription Factor Family AT2G28710 49.664 5.90e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g03909 zf-C2H2_6 5.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03909 - - gmx:100781211 155.606