Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03879 ATGGCAAGAAGAGTTGAGTACTCTTTTGATGCTTTTGATGTTTTTAACCAACCAAACAAGCCTACATACACATCAGATTTTTTTAGGTTTGATGTCTCCATTGTCATTCGAAATTGTTCAAACCCTCCAAATAGTCTTAGAACGGTATCATCCATGTTAGAAACACCAATATATATAAACTGCAATCAGTTCTTCAACCACAACCAAATCTTCCAATTGTTTTGCTTAAGTCAATTATCCTCGCCCTATTTAACTCATTGGAACCTTGCTGAATTGTCAGAAAATCTTATACCTACTGTTAAAGAGATATTCAACATCTCTGGGCCTTTTGTTACACTTCCAAGACCAACGAGTAATTTTCATCGAGGGATTATTTTCCCTGTGGTTCTGCATATTTGCGTGGATGTATATCCAGATGAAGAAAGATCAAGAACTGATGAAGAGATGATAGAAGAGTCTATGCAATTTGTAAATACAACTCCTGCATCCAATGAAGCCATCTCGTCTTTGAAAGCCTGCTCACTTCCTAGGGATTGTTGCATATGCATGCAGAGGTTTCATGATGAATTGGAAGAAGGTGGTAGTGATGATAGTGATGACGTGAAGGTTTCAACAATGGCATGCGGTCATATATTTCACCATGATTGTATTGTAAAATGGCTACAAACAAGTCATGTGTGCCCTTTGTGCCGTTATGCAATGCCTACTTGA 711 0.3783 MARRVEYSFDAFDVFNQPNKPTYTSDFFRFDVSIVIRNCSNPPNSLRTVSSMLETPIYINCNQFFNHNQIFQLFCLSQLSSPYLTHWNLAELSENLIPTVKEIFNISGPFVTLPRPTSNFHRGIIFPVVLHICVDVYPDEERSRTDEEMIEESMQFVNTTPASNEAISSLKACSLPRDCCICMQRFHDELEEGGSDDSDDVKVSTMACGHIFHHDCIVKWLQTSHVCPLCRYAMPT 236
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03879 236 SMART ring_2 179 230 IPR001841 -
Mepo6g03879 236 ProSiteProfiles Zinc finger RING-type profile. 179 231 IPR001841 -
Mepo6g03879 236 SUPERFAMILY RING/U-box 178 234 - -
Mepo6g03879 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 236 IPR013083 -
Mepo6g03879 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 235 - -
Mepo6g03879 236 Pfam RING-H2 zinc finger domain 178 231 IPR024766 GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mepo6g03879 Mepo-Chr6 51055822 51056532 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03879 147 235 C3H Transcription Factor Family AT1G18760 32.653 1.03e-11 60.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03879 - - psat:127079253 206.068