Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03863 ATGCAGAGATCAGGTTACGGTTCAGATGGAATATACAGGTCCTTAAGACCTTCCCTTATCTTACCAAAAAATCCAAACCTTTCTCTTGTCACACATCTCTTCAACAAAGTCGCTTCTTCCCCAAACAAAACCGCTCTTATAGATGCCGATTCTTCTCAAACACTTACCTTCGCTCAATTAAAATCCCTTACAATTAAACTCGCTCACTCTTTAATTCAAATCGGTTTAACCAAAAACGACGTCGTTCTCTTCCTCGCTCCTAATAGTTATCTCTACCCCGTTTTCTTCCTCGCCGTTGCTTCCATCGGCGCCGTCGCTTCCACCGTCAATCCACAATACACCACGGTCGAAGTTTCAAAACAAGCTAAAGATTCAAATCCGAAACTCATTATCACCGTCGCTGAATTATGGGAGAAAGTAAATCACCTCAACATCCCCGCCGTTTTTCTCAATTCCTCCGGCGTTGCAACACCGGAGACAGTTACGAGTTTCGAATCGTTTGTGAAACTCGGTGAATTAGCAACCGAATTTCCGAAAATTGACGTGAAACAAACCGATACGGCGGCGTTGCTGTATTCCTCCGGTACTACCGGTGTAAGCAAAGGAGTGATTCTAACTCACCAGAATTTCATCGCTTCAGCTGCAATGATTTCAATGGACGATGAATTGAACGGTGAAATCAACGACGTGTATCTCGTTGTTCTACCTATGTTTCATGTGTTTGGACTTGCGGTGATAACGTATTCGCAGCTTCAGAGAGGGAATGCGATTGTTTCGTTGAAGCGGTTTGAGTTTGAAGTGGTTTTGAAAACGATTGAGAAGTTTAGGGTTACGAGATTATGGATTGTGCCACCGATTGTACTTGCTCTTGCGAAACATGGTTTGGTTGATAAGTATGATCTTTCGAGTTTGAAGTATATTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGGAAGAGTGTGCTAAGCGCTTTCCGAATGCTATTGTTTCTCAGGGCTATGGTATGACTGAAACGTGTGGGATTGTTTCTGTGGAGAATACTAGAATGGGGATTCGTCATACTGGCTCAGCTGGAATGCTTGTTGCGGGTGTGGAAGCCCAAATTGTCAGTGTGGATACACTGAAGCCACTCCCTCCTGGACAGCTCGGGGAGATATGGGTGCGGGGTCCTAATATGATGCCAGGTTATTACAACAATCCACAGGCCACAAGATTGACTATAGATGAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGAAATCTTTTTGTCGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCGGAACTTGAAGGGCTTCTCGTTTCTCATCCTGAAATACTTGATGCTGTTGTCATTCCATTTCCTGATGCCGAAGCTGGTGAGGTTCCGGTTGCCTATGTTGTGCGATCACCCAATAGTTCACTAACCGAGGAAGATATTCAAAAGTTTATTGCTGATCAGGTAGCACCTTTCAAAAGACTGCGAAGGGTGACATTTATCAACACTGTTCCAAAAACAGCATCAGGAAAAATTCTGAGAAGAGAGCTTATTGACAAAGCACGATCCAAAATATAA 1620 0.4364 MQRSGYGSDGIYRSLRPSLILPKNPNLSLVTHLFNKVASSPNKTALIDADSSQTLTFAQLKSLTIKLAHSLIQIGLTKNDVVLFLAPNSYLYPVFFLAVASIGAVASTVNPQYTTVEVSKQAKDSNPKLIITVAELWEKVNHLNIPAVFLNSSGVATPETVTSFESFVKLGELATEFPKIDVKQTDTAALLYSSGTTGVSKGVILTHQNFIASAAMISMDDELNGEINDVYLVVLPMFHVFGLAVITYSQLQRGNAIVSLKRFEFEVVLKTIEKFRVTRLWIVPPIVLALAKHGLVDKYDLSSLKYIGSGAAPLGKELMEECAKRFPNAIVSQGYGMTETCGIVSVENTRMGIRHTGSAGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMPGYYNNPQATRLTIDEKGWVHTGDLGYFDEDGNLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPFPDAEAGEVPVAYVVRSPNSSLTEEDIQKFIADQVAPFKRLRRVTFINTVPKTASGKILRRELIDKARSKI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03863 539 Gene3D - 437 538 IPR045851 -
Mepo6g03863 539 FunFam 4-coumarate--CoA ligase 2 437 538 - -
Mepo6g03863 539 CDD 4CL 21 531 - -
Mepo6g03863 539 SUPERFAMILY Acetyl-CoA synthetase-like 23 537 - -
Mepo6g03863 539 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Mepo6g03863 539 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Mepo6g03863 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 436 - -
Mepo6g03863 539 Gene3D - 10 436 IPR042099 -
Mepo6g03863 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 534 - -
Mepo6g03863 539 Pfam AMP-binding enzyme 35 441 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03863 Mepo-Chr6 50899423 50903902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03863 1 539 Monolignol Biosynthesis Gene Families AT4G05160 67.279 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03863 K01904 - gmx:100797843 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03863 6 50899423 50903902 Mepo6g03863 6 50899423 50903902 ECH
Mepo6g03863 6 50899423 50903902 Mepo2g01821 2 26764395 26768767 PCT