Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03851 ATGGTGCTCCAAGGATGTGTTGGCCGCAACTCTGTTGAGGAGAAGACGGTGTTGTACATAAAGGGAAAGAAAAGGAAGGATACTGTTTGCATTGCTCTTGCTGATGATACTTGTGAAGAGCCTAGGGTTAGGATGAACAAAGTTGTGAGGTCGAATTTGCGAGTTCGGCTTGGAGATGTTGTGTCTGTGCACCATTGTCCTGATGTCAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACAATTGAAGGTCTCACTGGAGATCTCTTTGATGCATTCTTGAAACTCTATTTCGTGGAGGCTTATCGTCCCGTCAGAAAAGGAGATCTATTTCTTGTGCGGGGAGGGATGAGAAGTGTAGAGTTTAAGGTCATTGAAACTGATCCTGGTGAGTACTGTGTGGTTGCTCCAAACACTGAGGTCTTCTGTGAGGGGGAACCTGTGAAAAGAGAGGATGAAGAAAGGCTTGATGAAGTTGGTTATGATGACGTGGGTGGTGTTTGGAAGCAAATGGCACAGATTTGCGAGTTGGTCGAGCTTCCACTGAGGCATCCTCAACTTTTTAAGTCAATTGGTGCGAAAGCACCTAAAGGAATTTTGCTTTTTGGACCCCCAGGTACCGGGAAGACATTAATAGCAAGAGCTATTGCTAATGAAACTGGAGCTTTCTTTTTTGTATTAATGGACCAGAGATTATGTCCAAAATGGCTGGAGAGAGTGAAAGCAATCTTAGGAAAGCGTTTGAAGAAGCAGAAAAGAATGCACCTTCCATCATCTTTATTGATGAAATTGATTCTATTGCACCCAAGCGGGACAAGACAAATGGTGAAGTAG 840 0.4381 MVLQGCVGRNSVEEKTVLYIKGKKRKDTVCIALADDTCEEPRVRMNKVVRSNLRVRLGDVVSVHHCPDVKYGKRVHILPIDDTIEGLTGDLFDAFLKLYFVEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPNTEVFCEGEPVKREDEERLDEVGYDDVGGVWKQMAQICELVELPLRHPQLFKSIGAKAPKGILLFGPPGTGKTLIARAIANETGAFFFVLMDQRLCPKWLERVKAILGKRLKKQKRMHLPSSLLMKLILLHPSGTRQMVK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03851 279 Pfam ATPase family associated with various cellular activities (AAA) 201 256 IPR003959 GO:0005524|GO:0016887
Mepo6g03851 279 Gene3D - 8 68 - -
Mepo6g03851 279 FunFam Cell division control 48 69 165 - -
Mepo6g03851 279 FunFam Cell division control protein 48 homolog E 162 234 - -
Mepo6g03851 279 FunFam Transitional endoplasmic reticulum ATPase 12 68 - -
Mepo6g03851 279 Pfam Cell division protein 48 (CDC48), N-terminal domain 11 67 IPR003338 -
Mepo6g03851 279 PANTHER AAA-FAMILY ATPASE 156 230 - -
Mepo6g03851 279 Gene3D - 69 164 - -
Mepo6g03851 279 SMART CDC48_N_2 2 69 IPR003338 -
Mepo6g03851 279 SMART CDC48_2_2 86 152 IPR004201 -
Mepo6g03851 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 231 IPR027417 -
Mepo6g03851 279 SUPERFAMILY ADC-like 16 66 IPR009010 -
Mepo6g03851 279 Pfam Cell division protein 48 (CDC48), domain 2 87 151 IPR004201 -
Mepo6g03851 279 SUPERFAMILY Cdc48 domain 2-like 68 160 IPR029067 -
Mepo6g03851 279 Gene3D - 165 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03851 Mepo-Chr6 50707388 50711921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03851 152 267 Calmodulin-binding Proteins AT3G56690 39.316 3.99e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03851 K13525 - pvy:116122759 394.815