Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03830 ATGCCGAGTTTAAAAAAAAAGTATTACATGATTATACAAATTGGGTCATACAAGACGAACATTATTTTAGCAAAAAGTTGGCATTTTTGGGATATTCCGAATATGAAGGGATCTTGGTTTTTTGACAAGAATTTTAATGGTTTGTCTGATGAGACTTTCGATGATCTCAAGTTTTTCGATTTTCCATTGGAAGATGTGGACGCAAATAATGCTGAAGAAGATTGGAGTGCTCTTGGAGAGCCGTGTTTTGATGTTTTTTCAGTGTCCCCAGCAGTATTCTGTGGTAAAATAAAAAATGAAAATCCCCAACTCGGGGAAGGCTTCTCTGCTCCTTTTAATGGCATTTCCCCAATAATAAAAGAAGCGGCAAGAACTGCTGGACCAACATATGGAAAAACTATTCCCAATCAGAATGTCCCTTTCTATGAAAAAAAAGTTGTGCTTCAATACAGCCCGGTTTCTGTTTTTGAAGGCAGCAGTGCTTCCTCAGTTGAGAATTCCGGCTTTGATCTGCCTGTCATCCCAGTAAAGCGTGCGCGAAGTAAACGCCGGCGTCCTTCAAGCTTAAATCCTGTATTCTCGATTTCTTTCATTGCTAGCTTACAGGCTTTGCATAAGAAGATATCTGCCTCTGAGTCAGATTTAAACAGAGTAAAGAAACAGAAAAAAAGGGACCTCTATGTGTTCTCGGGTGATATTGAAACGAAGAAATCCTCATCACAAGAGTCAGTTGTCACGAGAAAGTGCACACATTGCGAGGTCACAGAGACTCCACAATGGAGAGAGGGACCCAACGGTCCCAAAACGCTCTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGCCGCCTCTATCCTGAATACCGGCCAGCGAACAGCCCCACTTTTGTAGCATCTGTGCACTCAAACAGTCACAAGAAGGTTCTGGAGATGCGAGGCGTAGTCATCAAAGACGGCGTTAGGGTCCGTAAGTTGGCTCCATCAAATGTTCCTGGAAATTCCGTAGGACAGTGTTATCCTGGATCTTTTTGA 1029 0.4286 MPSLKKKYYMIIQIGSYKTNIILAKSWHFWDIPNMKGSWFFDKNFNGLSDETFDDLKFFDFPLEDVDANNAEEDWSALGEPCFDVFSVSPAVFCGKIKNENPQLGEGFSAPFNGISPIIKEAARTAGPTYGKTIPNQNVPFYEKKVVLQYSPVSVFEGSSASSVENSGFDLPVIPVKRARSKRRRPSSLNPVFSISFIASLQALHKKISASESDLNRVKKQKKRDLYVFSGDIETKKSSSQESVVTRKCTHCEVTETPQWREGPNGPKTLCNACGVRYRSGRLYPEYRPANSPTFVASVHSNSHKKVLEMRGVVIKDGVRVRKLAPSNVPGNSVGQCYPGSF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03830 342 SMART GATA_3 243 293 IPR000679 GO:0006355|GO:0043565
Mepo6g03830 342 FunFam GATA transcription factor 238 324 - -
Mepo6g03830 342 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355|GO:0043565
Mepo6g03830 342 PANTHER GATA TRANSCRIPTION FACTOR 159 311 - -
Mepo6g03830 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 306 - -
Mepo6g03830 342 Gene3D - 239 322 IPR013088 GO:0006355|GO:0008270
Mepo6g03830 342 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Mepo6g03830 342 CDD ZnF_GATA 248 295 IPR000679 GO:0006355|GO:0043565
Mepo6g03830 342 Coils Coil 201 221 - -
Mepo6g03830 342 ProSiteProfiles GATA-type zinc finger domain profile. 247 279 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03830 Mepo-Chr6 50439864 50444879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03830 42 311 C2C2-Gata Transcription Factor Family AT1G08010 40.000 2.26e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo6g03830 GATA 3.7e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03830 6 50439864 50444879 Mepo6g03830 6 50439864 50444879 ECH
Mepo6g03830 6 50439864 50444879 Mepo2g01866 2 27352049 27365901 PCT