Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03829 ATGAAAGAAGCTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCAGGAGGAATGGTTCAAATGCCATCAGTGAACACAAAAGTGTTTTACTTTCCACAAGGGCATGCAGAACATGCACAATCCAACGTTGATTTTGGAGATTCTTTCAGAATTCCACCACTCATCCTCTGTAGAGTGGTTTCTGTGAAATTCTTAGCTGACCCTGAAACAGATGAAGTCTTTTCAAAGATAACTTTGATTCCCTTAAGAAATTCAGAGCTTGAAAATGATGATTCTGATGGTGATGGTTCGGAGAATTCAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACACAATCTGATGCAAACAATGGTGGAGGGTTCTCTGTTCCTAGATACTGTGCAGAAACGATTTTTCCTCGGCTTGATTACTCGGCTGAGCCACCGGTTCAGACCGTGATTGCAAAGGATGTTCACGGCGAGGTTTGGAAGTTTAGGCATATCTATAGAGGAACACCAAGGAGGCATTTGTTAACAACTGGTTGGAGTAGTTTTGTGAACCAGAAAAAGCTTGTTGCTGGCGATTCTATTGTGTTTTTGAGAGGTGAAAGTGGAGAACTTTTTGTTGGTATTCGTCGTGCAAAGCGAGGGATTGTTAATGGATTGGAAACACCTTCTGGATGGAGTTCTGGTAATGGAAGTTGTGGTCTTGGACCTTATGGTGGTGCTTTTTCTGCCTTTTTGAGAGAGGAGAATAAGTTGGGGGGTGTTGGTGGTAATTTGGGGGGTGGAAGAGTGAAAGTGAGTGGTGAATTAGTGAAGGAAGCTATGAGACTTGCTGCTAGTAATCAAACATTTGAGGTTGTTTATTATCCTAGAGCAAGTACTCCTGAGTTTTGTATTAAGACTTCAGCTGTTAAAGCTGCTATGAGAATTCAATGGTGTTCTGGGATGAGATTTAAGATGCCATTCGAAACCGAAGATTCTTCAAGGATTAGTTGGTTCATGGGGACAATTTCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTCACTTGGGACGAACCAGATTTACTACACAATGTGAAGCGAGTAAGTCCATGGTTGGTTGAATTGGTATCAAACATGTCGATGATTCATCTCACACCTTTCTCACCACCAAGGAAGAAACTCCGTTTTCCACAACATCCAGATTTCCCACTCGATGTTGTCCAGTTTCAAATACCAACATTTTCAGGCAACCCTTTTAACCCTTTGTGTTGTCTATCTTCTTCGGATAATTATAACGCTCCTGCCGTAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCGGATCTTCACCTTAACAACAACAAATTTCAGTTAGGTGTGTTTCCAAATAATCGCGAGACGATTTCTAACGTTAGCAACATAACTACGAACCATGATAATAAGAGCAAAGAAAGTATATCATGTCTGTTGACTATAGGAAATTCTCACAAGAGAAGTTTGGAGATCAAATCTGATAATAATGATAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAAATCTCTAGAAAATCTTCTAGTGATGATGTGTTGTTGTCCAAGAAAAAGGACAAAGAGAAGTGGTTTTTCAGTGATACTACTAAATCTTCTATTTCTGAACAGTTTTCACCAGCAAAATCTTCTACCACTAGTGCTAGTGCTGACTTTTGTTGGCAACTTGGATTAGATACTGGTCATTGTAAGGTTTTCTTGGAGTCAGAGGATGTTGGAAGAACCTTAGACTTGTCTTGTGTTGGTTCTTATGAAGAACTGTATAGAAAACTGGCTAAGATGTTTGGAATAGAAAGATCTGAGATGTTGAGTCATGTACTCTATCGCGATGTAACAGGTGCTGTTAAACAAACTGGTGAAGAACCCTTCAGTGACTTCATGAAGAAAGCAAAAAGATTGACAATTCTGATGGATTCAGGCAGCAAAGATACTAGAAGGGTTTGTATCACAGGAACTAGGAATGCTGAACGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGCATCTTTGTTTAA 2100 0.4029 MKEAEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVVSVKFLADPETDEVFSKITLIPLRNSELENDDSDGDGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGESGELFVGIRRAKRGIVNGLETPSGWSSGNGSCGLGPYGGAFSAFLREENKLGGVGGNLGGGRVKVSGELVKEAMRLAASNQTFEVVYYPRASTPEFCIKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSMIHLTPFSPPRKKLRFPQHPDFPLDVVQFQIPTFSGNPFNPLCCLSSSDNYNAPAVGIQGARHAQIGISLSDLHLNNNKFQLGVFPNNRETISNVSNITTNHDNKSKESISCLLTIGNSHKRSLEIKSDNNDKRHQFLLFGQPILTEQQISRKSSSDDVLLSKKKDKEKWFFSDTTKSSISEQFSPAKSSTTSASADFCWQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMLSHVLYRDVTGAVKQTGEEPFSDFMKKAKRLTILMDSGSKDTRRVCITGTRNAERGLDASNKTGPMSIFV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03829 699 ProSiteProfiles PB1 domain profile. 587 667 IPR000270 GO:0005515
Mepo6g03829 699 FunFam Auxin response factor 309 382 - -
Mepo6g03829 699 SMART B3_2 108 210 IPR003340 GO:0003677
Mepo6g03829 699 FunFam Auxin response factor 106 210 - -
Mepo6g03829 699 Gene3D - 586 671 - -
Mepo6g03829 699 Gene3D - 309 383 - -
Mepo6g03829 699 Pfam B3 DNA binding domain 108 209 IPR003340 GO:0003677
Mepo6g03829 699 Gene3D - 106 210 IPR015300 -
Mepo6g03829 699 CDD B3_DNA 107 208 IPR003340 GO:0003677
Mepo6g03829 699 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo6g03829 699 ProSiteProfiles B3 DNA-binding domain profile. 108 210 IPR003340 GO:0003677
Mepo6g03829 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo6g03829 699 SUPERFAMILY DNA-binding pseudobarrel domain 102 210 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03829 Mepo-Chr6 50416091 50420305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03829 5 669 B3 DNA Binding Superfamily AT4G30080 58.358 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo6g03829 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03829 - - gmx:100778135 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03829 6 50416091 50420305 Mepo6g03829 6 50416091 50420305 ECH
Mepo6g03829 6 50416091 50420305 Mepo2g01867 2 27379706 27383935 PCT