Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03827 ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGAGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTTTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCCTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCTATGAACAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAACGGGTTTATGCGCCAGCAATTGCACACTACCCCAGCAGCTCCAAATGCTGACGGTAGTGGCGTTGATTCCGCGGCTGCTGCTCCTATGAATTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAATGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCTTAAAAGATCGCCCAACTTGGTATCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACTATTGAACTTGTTTACACACAGACATATGCTCCAATGACACTGGCTTCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGCAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGCCCTAATGCTGCAGCCGCCTCACAGTTTGAGAGGGCTGAAATGCTCCCTAGTGGCTATTTGATTCGACCATGTGAAGGTGGAGGATCGATCATCCACATTGTAGACCACCTGAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCAATCTATGAATCGTCGCAAATGGTAGCTCAGAGACTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAAAGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGGTGCGGAGGGTGTTACTATTTCGGTGAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCTAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCAGAGTGGGCTGATTTTAGTGTTGATGCTTTTTCTGCTGCATCACTTAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACGAAGTTCACCGGAAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTGGTGCCTTCTGGTTTCCGCATTGTCCTGTTAAATTCTCAACCAGGTGATACAAAGAACACAACAACAGCAAATCGGACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCCGGCAACAGCTCATGCTAACGGAGATGCATCGTGTCCTAACAATCGATGTGTGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAGTGGTCTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGGCGTGTAGTTTCCGCCGTGCAGGCGGTTGCAACGGCTATATCTCCATCCAGCGTTAACACTTCTGGTGGAGCAAAACTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGTTATAGTCATCATCTGGGGGCGCACCTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAAGATATCACACTGGACAAAATATTTGATGAGTCTGCACGCAAGAATTTGATCGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGACGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGATAACAGTGTTCATTGCTTGGCTTTCTCATTCATTAATTGGTCATTTATATGA 2520 0.4647 MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHTTPAAPNADGSGVDSAAAAPMNSLRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLASARDFWTLRYTTNLENGSVVVCERSLSGSGAGPNAAAASQFERAEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPIYESSQMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTKFTGNQAIMPLGHTIEHEEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNTTTANRTLDLTSGLEVSPATAHANGDASCPNNRCVLTVAFQFPFESGLQDNVAAMARQYVRRVVSAVQAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHHLGAHLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03827 839 SUPERFAMILY Bet v1-like 163 373 - -
Mepo6g03827 839 Gene3D - 182 371 IPR023393 -
Mepo6g03827 839 SMART HOX_1 20 86 IPR001356 GO:0003677
Mepo6g03827 839 CDD homeodomain 23 83 IPR001356 GO:0003677
Mepo6g03827 839 CDD bZIP 75 114 - -
Mepo6g03827 839 Gene3D - 17 90 - -
Mepo6g03827 839 SMART START_1 163 373 IPR002913 GO:0008289
Mepo6g03827 839 SUPERFAMILY Homeodomain-like 20 87 IPR009057 -
Mepo6g03827 839 Pfam MEKHLA domain 696 838 IPR013978 -
Mepo6g03827 839 ProSiteProfiles 'Homeobox' domain profile. 18 82 IPR001356 GO:0003677
Mepo6g03827 839 Pfam Homeodomain 23 81 IPR001356 GO:0003677
Mepo6g03827 839 Coils Coil 88 126 - -
Mepo6g03827 839 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Mepo6g03827 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 839 IPR044830 GO:0003700
Mepo6g03827 839 CDD START_ArGLABRA2_like 158 372 - -
Mepo6g03827 839 Pfam START domain 164 370 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03827 Mepo-Chr6 50386171 50391336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03827 1 839 Homeobox Transcription Factor Family AT5G60690 75.943 0.0 1336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo6g03827 START 2.4e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03827 K09338 - gmx:100804870 1341.25