Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03812 ATGAGTTCTAACCAAAAACAACATCATCATGAACTTTCTTCTTGTAAAAGAACACTTTCTCTTCCAGTTCACAAGGAAAATCTTTTGATGGAAATACCCTGCAAGTCATCAGAAGAATCTTGTTCATCATCATCAAATGATTTTGTTGCAATAAAGATGCCATTAACACCAAGTCCACCTTCAACACAAAGGAGGGTGAATTTTCTTGTGACATCACGTTCTGTTGATGCACCAATTGATAATAATATCAATCTTGGAATTTCAACAACAAAAGCAAAATCATCATCAAATAGAAGTATATTACCAAAATTGAATTTCAGGTATAATAGGACTTCATCATCGGATATTGAAAAGGCGGTAATTGGAGCGCCAGAAAGTTCTTTTGTAGGGCCTCATGAGAAGCCTTCAATCTCAGGATCAGTGTCTTTGAGTAAGATATTTAATCCTAAGATTAATAGGACTTCATCATTACCTGTTGAAGAAATTGGACGTGTAAACACTGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGGGCGATAGCTCGCACTCGTTCAGAGCCCGTAGATAGCCAAGAAAAAATTACAAGGAAAATGGATAAGTTTTTCCGTGTTATTCCTTCCACCCCAGGTGTAAAGGAAGTGAAAGAATGGTTAAAAACGTCCACAGCAAAGGATACTGAAAACGATGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACATTGAAGATGGAATGCTGTTGCAAAGGTGAACTTGCCTTGGCTCACCAAGAATGTGCAATTAAGTGGTTTAGTATCAGAGGTAACAAGACCTGTGATGTGTGTAAGGAGGAGGTTCAGAACCTCCCTGTCACTCTCTTACGGATCCAAAGTGTTCAAACTCAGAATCCTGGAGCAAGGCCTCACCAGGAAGATGACTTCAGGGTTTGGCAGGAGTTGCCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTCGAGCAGCTTTTAGTTGGGAAGATGGGAACCAAAGCAATTTTCATTTCTCTTCCATTTTCTTGTGTACTCGGTCTAGTCTCCGCTATGACATCTACAACCATGGTGAGGAGCAAGTTCATCTGGCTTTATGCATCTGCTCAATTTCTTTTGGTGGTTCTCTTCGCGCATGTATTTTACCCCTTGTTTGGAAACCTGCAGGTTGGTAAGCAAGCAGTTTTGGCAATTCTTCTTGCATCATTTGCTGGGTTTGGTGTAATGATGAGCGGAAGTTCAGTTATTGCGGAGGTACTCAAATGGAGAAGAAGATGGCTGGCTTACTCAGAGCAGCAGCGTCGTGACTCTCAAGTGATGACACAAAAAGGACTATATCCTCAAGGTGTAATCACCCCACAATCAAGTCTTCCCAATCACAACCAAACCACAGTGCAACTGCAAAATCAACAGAATTCAAGTTCATAA 1506 0.411 MSSNQKQHHHELSSCKRTLSLPVHKENLLMEIPCKSSEESCSSSSNDFVAIKMPLTPSPPSTQRRVNFLVTSRSVDAPIDNNINLGISTTKAKSSSNRSILPKLNFRYNRTSSSDIEKAVIGAPESSFVGPHEKPSISGSVSLSKIFNPKINRTSSLPVEEIGRVNTEFAFGGCLGASPYRSQGAIARTRSEPVDSQEKITRKMDKFFRVIPSTPGVKEVKEWLKTSTAKDTENDGDDGEDIAEEEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQSVQTQNPGARPHQEDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRSKFIWLYASAQFLLVVLFAHVFYPLFGNLQVGKQAVLAILLASFAGFGVMMSGSSVIAEVLKWRRRWLAYSEQQRRDSQVMTQKGLYPQGVITPQSSLPNHNQTTVQLQNQQNSSS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03812 501 SMART ringv_2 248 297 IPR011016 GO:0008270
Mepo6g03812 501 CDD RING_CH-C4HC3_MARCH 249 297 - -
Mepo6g03812 501 PANTHER OS02G0165000 PROTEIN 22 467 - -
Mepo6g03812 501 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
Mepo6g03812 501 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
Mepo6g03812 501 SUPERFAMILY RING/U-box 245 300 - -
Mepo6g03812 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 304 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03812 Mepo-Chr6 50251825 50255921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03812 237 303 C3H Transcription Factor Family AT2G37950 41.176 3.26e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03812 - - cam:101488558 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03812 6 50251825 50255921 Mepo6g03812 6 50251825 50255921 ECH
Mepo6g03812 6 50251825 50255921 Mepo2g01888 2 27627395 27632121 PCT