Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03799 ATGATGTCTGAAGAAGCAGTTTCTGATACTTCCAACTTCAGAAGCACCTCAAACTCAAACCCTAATCTTCCTAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCGGATTCAGAAGTGATTGCTCTATCACCAAAATCACTGATGACATCGAACCGTTTCATCTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAGAACCTACAGCTACATCGACGGGGACACAATCTTCCATGGAAGCTTAAGCAAAGAAACAAGCTAGAGGTGATAAGGAAGAAAGTGTACGTTTGTCCAGAAAAGAGCTGCGTGCACCACGACCCTAGTCGAGCTCTCGGAGACTTAACAGGGATAAAAAAACACTTTAGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGCACTAAAGAGTACAGATGTGATTGTGGCACACTATTCTCCAGGAAAGACAGCTTCTTAACTCACAGAGCTTTCTGTGAATCCTTGGTGGAAGGAAGTGCAAGAATAGGTTCAGTTCCAGCAGTTATATCCAACTTTGGAAACAATCTTTTGATCAACACTCAAGCACAAAGAAATATTCCTCATGGTTTATTTGGGCTTAATCCGGAATATGGTGGGCCATGCCAAGAAACATTCATGGGAAATTTTCCCAATAATAACATCCCTCATCATAGTTATCTTCCAAATTCTAGTGCATTCTCATCATCAGGAGCAAACTCTGATTTAGAATTAGTCCATACATTTGGTTTATTACCACAAGGACAATGGATGAATTACAGATACAATGATCAGCATGCAGAAACATCATTTACAAGTAGTGGGGTTCTAAAGCTAGAACAACAACAAGAAGAAGACAAAATGCATGATTTGTCTCATTTGTATTCTCAGAACCAATTACAAGGATGTCCAAGTCACGTGTCAACAATGCAAACTACAACTACAAAGCTTATCAATGGTAATAATGATGCAGCTTTTAATAATATTGTTGAAGTTAAGAAATTGTTCAACCAAGGAAACCATGCTGGAAATTTCAATGAAGATCAGTTGAGCTTAACAAGAGATTTCCTTGGTGTTGGAGATGACTCGTTGAAGAGAACCTTGTTGCAACAACAAGTGATACCTAGGTTCAATCCAATAGGATCTGTCACAAACTTGCAAAGTGAGTTTGGTGGACACTATTGA 1263 0.3911 MMSEEAVSDTSNFRSTSNSNPNLPNPNSNSVKRKRSLPGTPDPDSEVIALSPKSLMTSNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNKLEVIRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRKDSFLTHRAFCESLVEGSARIGSVPAVISNFGNNLLINTQAQRNIPHGLFGLNPEYGGPCQETFMGNFPNNNIPHHSYLPNSSAFSSSGANSDLELVHTFGLLPQGQWMNYRYNDQHAETSFTSSGVLKLEQQQEEDKMHDLSHLYSQNQLQGCPSHVSTMQTTTTKLINGNNDAAFNNIVEVKKLFNQGNHAGNFNEDQLSLTRDFLGVGDDSLKRTLLQQQVIPRFNPIGSVTNLQSEFGGHY 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03799 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Mepo6g03799 420 MobiDBLite consensus disorder prediction 1 47 - -
Mepo6g03799 420 FunFam protein indeterminate-domain 12-like 40 109 - -
Mepo6g03799 420 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 392 IPR031140 -
Mepo6g03799 420 SUPERFAMILY beta-beta-alpha zinc fingers 60 158 IPR036236 -
Mepo6g03799 420 Pfam Zinc-finger double-stranded RNA-binding 61 83 IPR022755 -
Mepo6g03799 420 Gene3D Classic Zinc Finger 40 112 - -
Mepo6g03799 420 Gene3D Classic Zinc Finger 115 194 - -
Mepo6g03799 420 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Mepo6g03799 420 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Mepo6g03799 420 MobiDBLite consensus disorder prediction 1 35 - -
Mepo6g03799 420 SMART c2h2final6 61 83 IPR013087 -
Mepo6g03799 420 SMART c2h2final6 138 158 IPR013087 -
Mepo6g03799 420 SMART c2h2final6 103 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03799 Mepo-Chr6 50143781 50146643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03799 31 212 IDZ Gene Family AT3G45260 81.319 1.73e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g03799 zf-C2H2_jaz 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03799 K25870 - gmx:100811687 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03799 6 50143781 50146643 Mepo6g03799 6 50143781 50146643 ECH
Mepo6g03799 6 50143781 50146643 Mepo2g01903 2 27777921 27780728 PCT