Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03703 ATGAGTAACCCCAATAATGATCCAAACCATGATGATCATGATTATTATCCATTCGGAAATTTCTATCGTGGATCAAGTCAAAGTAACTTCAACAAAAAAATCTTGCTTACTGCCATAGTTTCTTTAGCACTTGTATTGATTTTGGTCTTAGCTCTTCACCTCTATGCAAGGTATGTTCTCAAACGCCAAGCTCGTCGAAGAGCTGCCATTCAACAACTCAGCCTCACCGTCGCTCAAGCTCACACTCAATTCTCCGAGCCAGCAAACACCGGACTCGACTCTACAATCATCGCCGCTCTTCCCACTTTCATCTTCAAACAAAAGCAACAAGAAGAAAACAAAAATGTATCCAATAATATTGTTGAATGCGCAGTGTGTTTGAGTGTTGTAGAAGATGAAGAAATGATGAGGTTGCTTCCTAATTGTAAGCATAGTTTCCATGTTGGTTGTATTGATAAGTGGTTAGCTTCACATTCCACATGTCCAATTTGTCGAACCAAGGTTGAACCGCGGCCTGAACTAGAGCCACGTGAGGGTCCCACTCCGTTTAAACCATCATTTGAAGGTACATCGGATGGTGGTAGTGGTGCTAGTGGGTCCCCCAAAAATATTTCAAGGCTAAACTCTTTTCGTAGAATTCTTACTAGGGATAGATCTTCCAGAAGAATCCAACCTTCTAGTACTCATCGTGAAGATATTATTATTGATCGTGATATAGAGAGACAATAA 729 0.4074 MSNPNNDPNHDDHDYYPFGNFYRGSSQSNFNKKILLTAIVSLALVLILVLALHLYARYVLKRQARRRAAIQQLSLTVAQAHTQFSEPANTGLDSTIIAALPTFIFKQKQQEENKNVSNNIVECAVCLSVVEDEEMMRLLPNCKHSFHVGCIDKWLASHSTCPICRTKVEPRPELEPREGPTPFKPSFEGTSDGGSGASGSPKNISRLNSFRRILTRDRSSRRIQPSSTHREDIIIDRDIERQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03703 242 CDD RING-H2_EL5-like 122 165 - -
Mepo6g03703 242 Pfam Ring finger domain 122 165 IPR001841 -
Mepo6g03703 242 MobiDBLite consensus disorder prediction 171 242 - -
Mepo6g03703 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 171 IPR013083 -
Mepo6g03703 242 SMART ring_2 123 164 IPR001841 -
Mepo6g03703 242 MobiDBLite consensus disorder prediction 211 242 - -
Mepo6g03703 242 SUPERFAMILY RING/U-box 97 173 - -
Mepo6g03703 242 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Mepo6g03703 242 MobiDBLite consensus disorder prediction 191 210 - -
Mepo6g03703 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 176 - -
Mepo6g03703 242 FunFam E3 ubiquitin-protein ligase ATL6 80 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03703 Mepo-Chr6 49204860 49206218 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03703 9 242 C3H Transcription Factor Family AT2G42360 43.089 7.55e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03703 K19038 - gmx:100796057 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03703 6 49204860 49206218 Mepo6g03703 6 49204860 49206218 ECH