Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03702 ATGGGAAGAAGACCTGCTAGGTGTTACCGTCAAATTAAGAACAAGCCTTATCCAAAGTCTCGTTTCTGTCGAGGAGTTCCTGATCCCAAGATCAGAATCTACGATGTTGGCATGAAGAAGAAGGGTGTCGATGAATTTCCATTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGAAGCCGCTAGGATTGCCTGCAATAAGTACATGTCGAAGTTTGCAGGAAAGGATGCATTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTACTCAGGATCAACAAGATGCTTTCATGTGCTGGTGCTGATAGGCTTCAAACTGGTATGAGAGGTGCTTTTGGAAAGCCTCAGGGTGTTTGTGCCAGAGTGGCTATTGGGCAGGTGCTTCTTTCTGTCCGTTGCAAGGACAACAACAGCCACCACGCTCAGGAGGCCCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATCGTTAGCAGGAAGTGGGGATTCACGAAGATCAACCGAGCTGAGTATCTGAAGTTGAAATCTGAAAACAGAATTATGCCTGATGGTGTTAATGCGAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGTCAACCTGGAAGAGCTTTTTTGAATGCCAGCTGTAATGAGGCTTAG 672 0.4702 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAEYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLNASCNEA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03702 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mepo6g03702 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Mepo6g03702 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Mepo6g03702 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mepo6g03702 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mepo6g03702 223 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mepo6g03702 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Mepo6g03702 223 FunFam 60S ribosomal protein L10 1 206 - -
Mepo6g03702 223 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03702 Mepo-Chr6 49195381 49198326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03702 1 219 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 88.128 1.32e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03702 K02866 - rcu:8283224 438.728