Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03701 ATGTTCGCTATTTACATGATCTACTCTAGGTTTATTTTCAATCGCGGAGTTCTCAGGAGAGCAGCCAATGGCGAAGTGAGACTCACCGCCACTCAAGCTCACACCCAATTAACAGAACCACCCAACACTGGTCTCGACCCTAAGTTCATCACTACTCTTCCTACTTTCCTCTTCAAACAAAAGCAACAAGCAGAAAATAACAATGTTTCCAATAATATTGTTGAATGTGCTGTGTGTTTGAGTTTATTGCAGAATGAAGAAATGATGAAGCTGCTTCCAAATTGTAAGCATAGTTTTCACGTGGGTTGTATTGACAAGTGGTTAGCTTCACATTCCACATGTCCAATTTGTCGAACCAAGGTTGAACCGCAGCTTGAAACAGAGCCACGTGAGGGTCCCACTCTGTTTAGACCACCATATGAAGGTGCATCATATGGTGGTGGTGTTAGTGGGTCCCCCGAAAAATATTTCGCGATCGAGCTCTTTTCGGAGGGTTCATACTAG 504 0.4345 MFAIYMIYSRFIFNRGVLRRAANGEVRLTATQAHTQLTEPPNTGLDPKFITTLPTFLFKQKQQAENNNVSNNIVECAVCLSLLQNEEMMKLLPNCKHSFHVGCIDKWLASHSTCPICRTKVEPQLETEPREGPTLFRPPYEGASYGGGVSGSPEKYFAIELFSEGSY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03701 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 124 IPR013083 -
Mepo6g03701 167 SMART ring_2 76 117 IPR001841 -
Mepo6g03701 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 128 - -
Mepo6g03701 167 FunFam E3 ubiquitin-protein ligase ATL6 32 124 - -
Mepo6g03701 167 Pfam Ring finger domain 75 118 IPR001841 -
Mepo6g03701 167 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Mepo6g03701 167 CDD RING-H2_EL5-like 75 118 - -
Mepo6g03701 167 SUPERFAMILY RING/U-box 49 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03701 Mepo-Chr6 49193352 49193855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03701 5 152 C3H Transcription Factor Family AT2G42350 42.105 3.64e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03701 K19038 - pvy:116106228 152.91