Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03678 ATGGCGTTGTTATTCAAGGATCCGGCGAAGATCTCGGCGTATAGAGATAGAAGATTCCCCGGAAATCAAGATGAATTTGAGCATGCGCTTAAAACTTCAACCACCGTTTACGTTGGGAACATGTCGTTTTACACTACGGAAGAGCAAATTTATGAACTTTTTTCACGAGCTGGTGAAATTAAGAAGATTATCATGGGTTTGGATAAGAACACCAAAACTCCTTGTGGCTTTTGCTTTGTTTTATATTACTCTCGTGAAGATACTGAGGATGCTTGCAAGTATATAAGCGGGACTATACTGGATGATCGCCCTATTCGTGTTGATTTTGACTGGGGATTCCAGGATGGAAGACAATGGGGTCGCGGTCGTAGTGGCGGCCAGGTGCGTGATGAATATCGTACTGATTATGATCCAGGTAGGGGTGGATATGGAAAGTTGGTTCAGAAAGAGCTTGAAGTTCAAAGGCATCTTGTGGACTACGGCACTGGTTCTTTGGGATCTTTTCCGCCAGTTATTCCATCTTCTTATGGTAGACATGGTGGTGGCCATGGTCACGGTGGTTCCTATAGGCATGGTAGAGGAGATTATCAAAGGAAGAGATACAGAGACGATGACCGCTACTCACACGAGCCCTCAAAAAGAACATCAGATCATGAATCTCGAAGGAACTCTGACCATAAGAACTCGAACTCTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGGGAGAGTGGTGATTCTGATGATGAGGAGGAAGATGATCGTAAAAGACGGGGTTAA 786 0.444 MALLFKDPAKISAYRDRRFPGNQDEFEHALKTSTTVYVGNMSFYTTEEQIYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRHLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGGSYRHGRGDYQRKRYRDDDRYSHEPSKRTSDHESRRNSDHKNSNSDHESRPEKNPRFRESGDSDDEEEDDRKRRG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03678 261 MobiDBLite consensus disorder prediction 120 139 - -
Mepo6g03678 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Mepo6g03678 261 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 259 IPR027157 GO:0000339|GO:0005846|GO:0045292
Mepo6g03678 261 MobiDBLite consensus disorder prediction 188 261 - -
Mepo6g03678 261 MobiDBLite consensus disorder prediction 124 138 - -
Mepo6g03678 261 CDD RRM_NCBP2 36 113 IPR034148 -
Mepo6g03678 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Mepo6g03678 261 MobiDBLite consensus disorder prediction 163 261 - -
Mepo6g03678 261 SMART rrm1_1 35 108 IPR000504 GO:0003723
Mepo6g03678 261 Gene3D - 6 150 IPR012677 -
Mepo6g03678 261 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Mepo6g03678 261 SUPERFAMILY RNA-binding domain, RBD 25 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03678 Mepo-Chr6 49002306 49007275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03678 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 6.07e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03678 K12883 - gmx:100789535 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03678 6 49002306 49007275 Mepo6g03678 6 49002306 49007275 ECH