Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03670 ATGACTACTATTTGTGCTGAACAACACCAACAACACAAGTTTCATTCTTCCTACCAACCTCTCTCTCCCAAAAAATCCCTTAGAGACATCGACATCCCACCAAGAAAGCTTCTCACCCGCCGCAACACCACCACCGCCGTCGACATATTCTCCGACGACACCATCCTCCAAAAGTTCCTCCCACACAATGACTCTGACTCAGACTCCGATGATCCTTACTCATCTGACCATTTCCGAATGTATGAGTTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGCCACGACTGGACTGACTGTCCATTCGCTCACCCTGGTGAAAAAGCTCGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGGACAGTTTGCCCTGAGTATCGCCGCGGTGGCTGTAACCGCGGCGATACTTGTGAGTTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACTGAAGCATGCAAAGATGGTAAAAACTGTAAGAGGAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTACCAGTTACATCATCTTCTCCATCTTCAAATGAACATTTTTCATGCAACAAGAAAAATAACAAGCTTTTGAATAACCATGTTGCTTCAAAATCAAACAATTGTTGTTTGTTTTGTCACTGTGGTGGTAATGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCACCACCGGCATCACCACCTATGTCTCCGATGAAGCCACGAAATGGTGTTTCATCGCTTTCGCGCTATGGTTCGTCGATTAATAGTAGCAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGTTCATTTGAAGGGATGAATTTCAATGACGGTTCATCTTCTTCTTCTTCACCTGTTTCTGCTGCTAAAGCACTTCAGATACAAAACATGGGTTATCTTGAATCTCTTGATGTTCCTGAGGAACAGAATCAGCAACACTTTATTGTTTCACCTTCTTCTTCTTTTGATCATCAACAACATTTCAATATTCTTTCACAATCTATTCATCAGAATTTGACACCAAGTTTCAATGATGTTGACAATAACATCATTAACAACAATATGAACATGTTTTTGGGAAATAACGACAACCTTAATAAGCTTGTTGGTGGTGGTGACGTCAATGGTTTGTCTTGTCCTGCCCCTGATCTCGGTTGGGTTAATGAATTGCTGATGTAG 1239 0.4229 MTTICAEQHQQHKFHSSYQPLSPKKSLRDIDIPPRKLLTRRNTTTAVDIFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSPSSNEHFSCNKKNNKLLNNHVASKSNNCCLFCHCGGNGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNGVSSLSRYGSSINSSNLRYRDMLIDLLGSFEGMNFNDGSSSSSSPVSAAKALQIQNMGYLESLDVPEEQNQQHFIVSPSSSFDHQQHFNILSQSIHQNLTPSFNDVDNNIINNNMNMFLGNNDNLNKLVGGGDVNGLSCPAPDLGWVNELLM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03670 412 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Mepo6g03670 412 PANTHER UNKEMPT FAMILY MEMBER 50 411 IPR045234 -
Mepo6g03670 412 Gene3D - 114 191 - -
Mepo6g03670 412 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Mepo6g03670 412 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Mepo6g03670 412 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Mepo6g03670 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03670 Mepo-Chr6 48914312 48915929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03670 70 179 C2H2 Transcription Factor Family AT5G07500 68.182 3.19e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo6g03670 zf-CCCH 1.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03670 K23047 - gmx:100787049 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03670 6 48914312 48915929 Mepo6g03670 6 48914312 48915929 ECH