Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03660 ATGGATCAAAATCAACAAGGAGGTCAACCTTCTTCTTCAACCAAAGTCGAAAGAAAGATCGTTGAGAAAAATAGGAGAAACCAAATGAAGATCCTCTTTTCTAAACTCAACTCTCTTCTCCCTAGCTATAATCCAAAGGAATTAGCGTTACCATTACCTGATCAAGTAGATGACGCTATAAACTACATAAAGGGGTTAGAGACAAATCTAAAGTTGGCAAAGGAGAGGAAAGAAAGTTTAATGGGAAACAAGAGATCACGTGGTGGCTGCTCGAGTTCTTCTGGAAACATAAAGTTGCCAAAAATAGAAATTCATGAAATGGGACCCACTCTACAAGTCATAGTTACATGTGGGGTTGATGACCATTTTATTTTCTGTGAAATCATGAGAATACTGCATGAAGAGAACGTTGAGGTTATCTCTACAAATTATTCTTTGGCTGGCCATTCACTTCTTCATACCGTCCATGCTCAGATTCCGCAATCTTTGTTGCAATTTGGAGAAACCAAAATAAGCGAGAGATTGAAAGCATTTGTGAACGGATCTGTGAGCGATGTGGAAACGGAGCCTCTATTGTGGGATCTTGAAATTGGAACTGAGAGTTGGGAGCTTCTGCATTCTGTAGGTGGAGCTGAGCTAGACATGTTGAAGGGTGAATCTGAGCTAGGCAAGTTGAAAGTGGAGCATGACCTGAATGGTGAAGCCGAGCAAGCATGA 717 0.4086 MDQNQQGGQPSSSTKVERKIVEKNRRNQMKILFSKLNSLLPSYNPKELALPLPDQVDDAINYIKGLETNLKLAKERKESLMGNKRSRGGCSSSSGNIKLPKIEIHEMGPTLQVIVTCGVDDHFIFCEIMRILHEENVEVISTNYSLAGHSLLHTVHAQIPQSLLQFGETKISERLKAFVNGSVSDVETEPLLWDLEIGTESWELLHSVGGAELDMLKGESELGKLKVEHDLNGEAEQA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03660 238 FunFam Transcription factor bHLH162 6 92 - -
Mepo6g03660 238 Coils Coil 56 83 - -
Mepo6g03660 238 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 178 - -
Mepo6g03660 238 Pfam Helix-loop-helix DNA-binding domain 15 67 IPR011598 GO:0046983
Mepo6g03660 238 Gene3D - 8 89 IPR036638 GO:0046983
Mepo6g03660 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 84 IPR036638 GO:0046983
Mepo6g03660 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03660 Mepo-Chr6 48796681 48800007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03660 13 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.227 1.87e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g03660 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03660 - - mtr:25487667 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03660 6 48796681 48800007 Mepo6g03660 6 48796681 48800007 ECH
Mepo6g03660 6 48796681 48800007 Mepo2g02721 2 36982857 36984286 PCT