Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03647 ATGCGCCGCAGCAACCTACAGTACATAATGGGTACAACAAGGCAAGGGAAAAGGAACAAATACACAATCAGAGGCACCGACACGGTCGTTAGAGCTAAAGACTGTGTTTTGCTACGCCGTACTGGCGCGATCAAACCAATCATAGCCCGTGTGGAAAAGATTGAGCAGGATAATTCGAACAGAATGAGGGTCTATGTAAGAAGGTATTATCGACCCGAGGAAACCATTGAAGGACGTGTATGTTTTCATGGAGATAAGGAGCTGTTTTTGTCTAATCATTATGATGTTCATAGTGCTGACACAATTGAAGGGAAGTGTTTTGTGCACACTTTGAAGAACTACATGAAGCTTGAAGTTGTAGGTGCTAACGATTACTTTAGCAGGTTCTGGTACAATGCTTTTACTGGGGCTATGACACCTGAACGCGTTGAAGTGTTATGCAAATGTGAGATGCCTTATAACCCGGATAGGTTAATGGTGCTGTGTGGAAGTTGCAATCAAAGGTACCATCCTAAATGTGTGGGCATGCCTGTTGAAGAAGCAACGAAATCAGAAGATTTTAGATTTGTTTGTTCAAAATGTTCACCTGATTTAAAGGATTAG 603 0.4212 MRRSNLQYIMGTTRQGKRNKYTIRGTDTVVRAKDCVLLRRTGAIKPIIARVEKIEQDNSNRMRVYVRRYYRPEETIEGRVCFHGDKELFLSNHYDVHSADTIEGKCFVHTLKNYMKLEVVGANDYFSRFWYNAFTGAMTPERVEVLCKCEMPYNPDRLMVLCGSCNQRYHPKCVGMPVEEATKSEDFRFVCSKCSPDLKD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03647 200 SUPERFAMILY FYVE/PHD zinc finger 139 197 IPR011011 -
Mepo6g03647 200 Gene3D - 7 139 IPR043151 -
Mepo6g03647 200 ProSiteProfiles Zinc finger PHD-type profile. 144 197 IPR019787 -
Mepo6g03647 200 Pfam PHD-finger 147 196 IPR019787 -
Mepo6g03647 200 ProSitePatterns Zinc finger PHD-type signature. 147 194 IPR019786 -
Mepo6g03647 200 ProSiteProfiles BAH domain profile. 28 142 IPR001025 GO:0003682
Mepo6g03647 200 SMART PHD_3 146 195 IPR001965 -
Mepo6g03647 200 PANTHER OS08G0421900 PROTEIN 15 196 - -
Mepo6g03647 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 200 IPR013083 -
Mepo6g03647 200 SMART BAH_4 28 142 IPR001025 GO:0003682
Mepo6g03647 200 Pfam BAH domain 30 133 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03647 Mepo-Chr6 48664319 48665878 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo6g03647 BAH 7.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03647 K25868 - gmx:100800993 233.802