Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03642 ATGCACCATATGCTAGTGCTAATGGACATTCTGTCGAACCGGGCCAAAGCTGATGCTAATGCAGATTCTACTAAAACCTGTTCTAATGATTTTGAATGCAACATATGTTTGGAGCATGTGAAAGATCCAGTGGTAACACTTTGTGGTCATCTCTATTGTTGGCCTTGTATTTACAAATGGATTAATAGCACCTCATGGGAACATAATGAGAAACCAGAATGTCCAATTTGCAAATCAGAAATTTCAGAATCAACACTTGTTCCATTATATGGTCGTGGCAAAACCACATCAAGTTCTGAAGGTGAGGCTCATCAAGATGGGATTGTTGTACCACCAAGACCACTTGGTCCAAGATCACTTGATACTGCAAATGTTTCACAACCTGAACTAGAACAAGCAGAAGCACCACCAGCACAGGAGAGTAGTTTGCACATTTGCTTACAATATGGCCCATATAAACTTGATTTCCGAAAATTTGATTGA 483 0.3975 MHHMLVLMDILSNRAKADANADSTKTCSNDFECNICLEHVKDPVVTLCGHLYCWPCIYKWINSTSWEHNEKPECPICKSEISESTLVPLYGRGKTTSSSEGEAHQDGIVVPPRPLGPRSLDTANVSQPELEQAEAPPAQESSLHICLQYGPYKLDFRKFD 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03642 160 Pfam Zinc finger, C3HC4 type (RING finger) 33 77 IPR018957 GO:0046872
Mepo6g03642 160 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Mepo6g03642 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 109 IPR013083 -
Mepo6g03642 160 SMART ring_2 33 77 IPR001841 -
Mepo6g03642 160 MobiDBLite consensus disorder prediction 91 137 - -
Mepo6g03642 160 SUPERFAMILY RING/U-box 28 90 - -
Mepo6g03642 160 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 131 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo6g03642 160 ProSiteProfiles Zinc finger RING-type profile. 33 78 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03642 Mepo-Chr6 48618341 48621816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03642 28 127 C3H Transcription Factor Family AT4G28270 50.459 3.17e-32 112