Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03641 ATGGCCTTCAATCAGTATTTTGAGGAGGGTATGAACCAAATTGATTCCATGGAAGAAAAATCATCTCAAGAAATGTGGAAATGTGCAAGTGCTGAAGCAATTTCTGGTTCTAGTGGCTTTGACTGCAACATATGCTTGGAGTGTGTACAAGATCCAGTGGTAACTCTCTGTGGTCATCTCTACTGCTGGCCCTGTATTTACAAATGGCTTAATTTCCATGCCAAAAATCAAGAGAAGCAGAAGGAGGAGCCACAATGTCCAGTATGCAAATCAGAAATCTCAAAATCATCTCTTGTTCCGCTCTACGGCCGTGGCCAAACTACACCGCCTTCTAAAAAAGGGAGTGTCATACCACCTAGACCGATTGGTCCTTCATGGATGACAAACTTACCAAGATCACTTGATGCTGCAAATGTTTCACAACATAATTCTCGGGCTTATCATCCCCATTATCTGAATCATTCACAACGATACCCTTCGCCAATGCTTAACACAGGTGGCTCACTGCCCAATCCATTGGATACAAGTTATGGTGTCTTTGGTGAGATGATATATGCAAGGATCTTTGGAAACCAAGTGACAAACATATATACATACCCAAATTCATACAATCTTACGGGGATCAGTAATCCAAGGATCAGAAGGCATTTGATGCGAGCTGATAAGTCGCTCGGTAGAATCTGTTTCTTCCTCCTTTGTTGCACAGTTTTGTGTCTTCTCCTATTTTGA 729 0.4198 MAFNQYFEEGMNQIDSMEEKSSQEMWKCASAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHAKNQEKQKEEPQCPVCKSEISKSSLVPLYGRGQTTPPSKKGSVIPPRPIGPSWMTNLPRSLDAANVSQHNSRAYHPHYLNHSQRYPSPMLNTGGSLPNPLDTSYGVFGEMIYARIFGNQVTNIYTYPNSYNLTGISNPRIRRHLMRADKSLGRICFFLLCCTVLCLLLF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03641 242 SMART ring_2 42 89 IPR001841 -
Mepo6g03641 242 Pfam RING-type zinc-finger 42 87 IPR027370 -
Mepo6g03641 242 SUPERFAMILY RING/U-box 38 102 - -
Mepo6g03641 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
Mepo6g03641 242 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Mepo6g03641 242 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Mepo6g03641 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03641 Mepo-Chr6 48582783 48585727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03641 34 242 C3H Transcription Factor Family AT4G28270 41.935 5.71e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03641 K10666 - gmx:100785491 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03641 6 48582783 48585727 Mepo6g03641 6 48582783 48585727 ECH