Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03570 ATGGTGCATTGTGATCACTGTTTGAGGAACGTTTCTGGAACTAGAATTGACGAGGGTCAATTGTGTTGTGAGTATTGTGGGAAGGTGTTGGAAGAATGCTTTCTATCTAATGAGCCAACTTTTCAGAAAGGCTCTGCTGGACAGAGCAAATTCTCAGGCAATTTGATAAGGGCGGTTAATGAAATGGACTCACGTCAAAGGACTACAGATAGAGCTACAGAAAATATTAGAAATCTATGTCGCAACCTTGGAATGGATGATTATAGTATAGCTGATGCAGCTGTGAAATTTTATATAATAGGACTAGAGAAAAACTTTACCAAGGGACGTAGATCTGAACTTGTACAAGCTGCTTGTCTTTATCTTGCATTCCGGGATAACGATAAGCCATACCTTCTTATTGATTTTTCAAATTGTTTAAGGACAAATGTTTATGCGCTTGGCTCAGTTTTTTTGCAGCTTTTGAAAGTGTTAAGGCTCGAAGAACACGCGATTGTTCGAAAGCTTGTTGATCCCAGTCTTTTTATTTACAAATTTACGCATACTTTGTTAAAGCAAAGGAATATGGCTGTCTCCGAAACTGCGCTGAATATTCTTTCCGACATGAAACGTAACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGCGGTGCAGCGTTATACATGGCTGCTCTTGCAAATGGTTTTCCGTGCACGAAATCAGATGTTCTAAGAGTCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGATAGAGTATGAGAACACAGAGTCTTCCAGCTTGACAATTGACGAGTTGAATGCAATGGCAAAAGAGCATGAAAACCGTCCAATTAAAGTACCAAATGGCGAACTGAACAAATGCATTTCAAAGGAGGAGGAGGAGGAGGGGGAGGAGGGGGACCCCCTAACAAAGAAGAAGAAGAAGAAGGACCCCCTAAGGTGTGAACACAAGGGTATGGATCCTCCAATACCCCTCTTTGCACTTGGATTGTGCGAAACATGTTACAGATTTTTTGATAAACTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAAGGATAGAATGGTAAAGTCACATACTGAGGAGAATGCTAATAAATCAGATGATTTGGCAATGGATTCAAATGATGCATACGAGAGCCAAATAGAGTTACATACCTCTGAGCCTGGAAATATTGGGGGAGAGTATGTGGCCAATAAAGATGGTGAGCATGACGAGTCACGTATAGAAGATGATATGAATGAAAAAACTCATGATGAATCAGAAAGTCTCTCTGATATTGATGATAAGGAGGTTGATGGCTACCTTCACAACGAGGAGGAAACACGTTACAAGAAGCAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTGTCAAGGAAGCAGCTGCAGCAGCTGAAAGGAGAAGATTAGAGGAGGAATTAAAAAATTGTACCCCTGAAGAGCGTGAAGCAAGAGAACTTAGGGGAGCTGTTGCTGCAGATGTGGCAAAATCCAGAAAGGAAAAGAGGAAACAACGAGCTGAAGAGGAAAGAAGGTTGGGTCCTGCTCAATCTGCTGTAGAGGCAACTAGCCGAATGTTGAAAACAAAGAGGCTCAGCTCCAAAGTCAATTTGGATCGCTTGGATAAATTATTCGATAAACCGGCAGCTCCAGAGAATAACAAGAAAGTACGATTTGAAACAAAGGAGGATGAATTGGAACCAGTCAACGAATTTGCGGCTGATGAAGATATGTATGCAGAATATGATGATACTATGTATCCAGAAAATGACTATGAGACATATGACTACGAGGAAGCCGGTGGTTTTTATGAATATTGA 1863 0.4171 MVHCDHCLRNVSGTRIDEGQLCCEYCGKVLEECFLSNEPTFQKGSAGQSKFSGNLIRAVNEMDSRQRTTDRATENIRNLCRNLGMDDYSIADAAVKFYIIGLEKNFTKGRRSELVQAACLYLAFRDNDKPYLLIDFSNCLRTNVYALGSVFLQLLKVLRLEEHAIVRKLVDPSLFIYKFTHTLLKQRNMAVSETALNILSDMKRNWMQTGRKPSGLCGAALYMAALANGFPCTKSDVLRVVHVCEATLTKRLIEYENTESSSLTIDELNAMAKEHENRPIKVPNGELNKCISKEEEEEGEEGDPLTKKKKKKDPLRCEHKGMDPPIPLFALGLCETCYRFFDKLSGGLGGGLDPPAFQRAEKDRMVKSHTEENANKSDDLAMDSNDAYESQIELHTSEPGNIGGEYVANKDGEHDESRIEDDMNEKTHDESESLSDIDDKEVDGYLHNEEETRYKKQIWEFNNREYLEEQAVKEAAAAAERRRLEEELKNCTPEEREARELRGAVAADVAKSRKEKRKQRAEEERRLGPAQSAVEATSRMLKTKRLSSKVNLDRLDKLFDKPAAPENNKKVRFETKEDELEPVNEFAADEDMYAEYDDTMYPENDYETYDYEEAGGFYEY 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03570 620 Pfam Transcription factor TFIIB repeat 167 257 IPR013150 GO:0017025
Mepo6g03570 620 Pfam Transcription factor TFIIB repeat 67 156 IPR013150 GO:0017025
Mepo6g03570 620 Coils Coil 467 487 - -
Mepo6g03570 620 MobiDBLite consensus disorder prediction 491 529 - -
Mepo6g03570 620 MobiDBLite consensus disorder prediction 408 442 - -
Mepo6g03570 620 Gene3D - 171 262 - -
Mepo6g03570 620 PRINTS Transcription initiation factor IIB signature 117 136 IPR000812 GO:0006352|GO:0070897
Mepo6g03570 620 PRINTS Transcription initiation factor IIB signature 211 227 IPR000812 GO:0006352|GO:0070897
Mepo6g03570 620 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Mepo6g03570 620 SMART cyclin_7 74 156 IPR013763 -
Mepo6g03570 620 SMART cyclin_7 174 257 IPR013763 -
Mepo6g03570 620 Gene3D - 60 163 - -
Mepo6g03570 620 MobiDBLite consensus disorder prediction 293 319 - -
Mepo6g03570 620 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 550 IPR000812 GO:0006352|GO:0070897
Mepo6g03570 620 Pfam Brf1-like TBP-binding domain 435 560 IPR011665 -
Mepo6g03570 620 Gene3D Single helix bin 426 477 - -
Mepo6g03570 620 MobiDBLite consensus disorder prediction 491 540 - -
Mepo6g03570 620 MobiDBLite consensus disorder prediction 302 319 - -
Mepo6g03570 620 SUPERFAMILY Cyclin-like 169 259 IPR036915 -
Mepo6g03570 620 CDD CYCLIN_TFIIIB90_rpt2 168 258 - -
Mepo6g03570 620 MobiDBLite consensus disorder prediction 397 442 - -
Mepo6g03570 620 FunFam Transcription factor IIIB 90 kDa subunit 61 164 - -
Mepo6g03570 620 FunFam Transcription factor IIIB subunit 171 260 - -
Mepo6g03570 620 SUPERFAMILY Cyclin-like 72 161 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03570 Mepo-Chr6 47954167 47966961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03570 1 544 Inorganic Solute Cotransporters AT2G01280 41.091 1.53e-104 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03570 K15196 - gmx:100817609 567