Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03530 ATGGATATGGATTCCACAGGTGGTTCCTCCATTTGGCTCTATGATTATGGCTATGATGATATATCTATTTCTGCTGCTGATTTCATGGCTTCTGACTCTTCTGCTGCTGCTTCTGCTTTCACCTGGATGCCTCAGCCTCAGTCTCAGTCTCAGTCTCTGACTCAGATCATCAATCCTCCTTCCTCCCATATGAGCTTGGAAATGGATTACTCCCTGGATTCAACTGTAATGGAAAGTAACCCTTCAAAGCGCATGGAAATGGAATACTCACTGGATTCAACAGTACTGGAAAACGGCCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTAGCTCCAAGGCAGGTCGTGAGAAAGTGCGAAGGGATAAATTGAATGACAGGTTTATGGAATTGAGTTCTGTCTTAAAGCCTGATACGCTGCCCAAAACAGACAAGGTTAGCCTATTAAATGATGCGGTTCGAGTGGTGACCCAGTTAAGAAATGAAGCTGAGAGGCTCAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAAAATAAGCTGAAGCAAGACAAAGAAAAGTTGGAGCAGCAGGTGAAATTATCAAGTGTACAGTCCAGCTTCCTCTCTAATGCCATGGCTGCTAAAGGACAAACTGCTAACCACAAACTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCACCTGCTTCGACCTCCGGTTGCTTAA 795 0.4365 MDMDSTGGSSIWLYDYGYDDISISAADFMASDSSAAASAFTWMPQPQSQSQSLTQIINPPSSHMSLEMDYSLDSTVMESNPSKRMEMEYSLDSTVLENGPSKRLRTESYASSSKAGREKVRRDKLNDRFMELSSVLKPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKQDKEKLEQQVKLSSVQSSFLSNAMAAKGQTANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03530 264 SMART finulus 115 166 IPR011598 GO:0046983
Mepo6g03530 264 Pfam Helix-loop-helix DNA-binding domain 113 160 IPR011598 GO:0046983
Mepo6g03530 264 CDD bHLH_AtILR3_like 114 189 - -
Mepo6g03530 264 Gene3D - 112 191 IPR036638 GO:0046983
Mepo6g03530 264 Coils Coil 150 212 - -
Mepo6g03530 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 160 IPR011598 GO:0046983
Mepo6g03530 264 PANTHER BHLH TRANSCRIPTION FACTOR 27 264 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Mepo6g03530 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 176 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03530 Mepo-Chr6 47505293 47508323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03530 97 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 59.887 1.17e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g03530 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03530 - - psat:127086780 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03530 6 47505293 47508323 Mepo6g03530 6 47505293 47508323 ECH