LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo6g03519	ATGAGGATTATTATTGCCACAGAAATAAACAAATTTTTTATTGAAGTGGGAACCCTAGAAACAGTTTTAGAAATCAAAAGGAAAATAGAACAAATCCATGGTATTCCAGTGGCTTACCAAATCCTAGCGGTGTGTGGGTTTGAACTACTGGATGGATTAGACATGGAAGATTACCCAATAGTCACTGAAGGCACAAAAGTTGACCTCACCATCAAGCCAATGGAGCCACATATCATTCACCGTCCTAACAAAATGCAAATCACAGTAAAATTCTCTGCTAGACTGATTAACATAGAGTTGGATAAGACAGATACTGTCCATAGCTTGAAGGAAAAAATTCACATCATTGATAACACCCCCATCAAATCAATGAAACTTTTCTTTTTGGGGAGGGAACTGAATGAAGATTTCCGAAACCTAAATGAGTATGGTATTCGTGAATTTTCTGAAATTATTGTGTTCCTCAAGACCACAAACCGGACAAAAGAACCACCAACTAGAAAGCTGAACTTTGTGGTACAAACTTCCTCTAGTTTGCTTAATGCAGCCACCATTCCATTGGAGATGAGAGATACAAGCACTGTCAATGACTTGAAGCAGTTGCTGCTGAGCAGAAAAATTCTGCCAGTTGATGATTATTTGTTTATCCATAGGCAGAGGATCATGCGTGATAGTTGTAGCCTTAGGTGGCATGGAGTTGAAAATGGAGACCAGCTCTATGTGTTTAAAGGGACGGTTAGTCGCAGTGGGTATGCCTGA	759	0.3953	MRIIIATEINKFFIEVGTLETVLEIKRKIEQIHGIPVAYQILAVCGFELLDGLDMEDYPIVTEGTKVDLTIKPMEPHIIHRPNKMQITVKFSARLINIELDKTDTVHSLKEKIHIIDNTPIKSMKLFFLGRELNEDFRNLNEYGIREFSEIIVFLKTTNRTKEPPTRKLNFVVQTSSSLLNAATIPLEMRDTSTVNDLKQLLLSRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDQLYVFKGTVSRSGYA	252

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo6g03519	252	ProSiteProfiles	Ubiquitin domain profile.	169	241	IPR000626	GO:0005515
	Mepo6g03519	252	SUPERFAMILY	Ubiquitin-like	81	161	IPR029071	-
	Mepo6g03519	252	SMART	ubq_7	167	244	IPR000626	GO:0005515
	Mepo6g03519	252	SMART	ubq_7	85	156	IPR000626	GO:0005515
	Mepo6g03519	252	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Mepo6g03519	252	ProSiteProfiles	Ubiquitin domain profile.	1	60	IPR000626	GO:0005515
	Mepo6g03519	252	ProSiteProfiles	Ubiquitin domain profile.	85	160	IPR000626	GO:0005515
	Mepo6g03519	252	Gene3D	-	168	244	-	-
	Mepo6g03519	252	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	73	-	-
	Mepo6g03519	252	CDD	Ubl_ubiquitin_like	11	69	-	-
	Mepo6g03519	252	Gene3D	-	1	72	-	-
	Mepo6g03519	252	Gene3D	-	84	156	-	-
	Mepo6g03519	252	SUPERFAMILY	Ubiquitin-like	180	242	IPR029071	-
	Mepo6g03519	252	CDD	Ubl_ubiquitin_like	184	242	-	-
	Mepo6g03519	252	SUPERFAMILY	Ubiquitin-like	1	75	IPR029071	-
	Mepo6g03519	252	CDD	Ubl_ubiquitin_like	87	154	-	-
	Mepo6g03519	252	Pfam	Ubiquitin family	10	72	IPR000626	GO:0005515
	Mepo6g03519	252	Pfam	Ubiquitin family	87	157	IPR000626	GO:0005515
	Mepo6g03519	252	Pfam	Ubiquitin family	180	241	IPR000626	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo6g03519	85	164	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	33.333	2.58e-06	43.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo6g03519	-		-	gmx:100781557	394.045

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo6g03519	6	47404735	47405568	Mepo6g03519	6	47404735	47405568	ECH