Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03514 ATGAACGACCTTCTTACTGATTCATTTGTTAGTGAGGCTAATCATGGACAACCTTCTAGACAAGGTGATATCGAAATGGGATTGCAGGATCAAAGAAGCAGTTCTGATATGGGAATGGAAGCTTTTAATAAACAGATCCAAGATGCCGATAAACAAATTGAGAAGGTGTCCGCGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAAAAGAGGATGGAAAAGGATATTGATGAAGTTGGGAAGATTGCACATGGGGTCAAAGCAAAAATAGAAGCTATCAATAGAGAAAATCTAAACAATAGACAAAAGCCTGGCTGTGAGAAGGGAACCGGTATTGACAGAGCAAGAATGAATATGACAAATTCCTTGACTAAGAAGTTCAGGGATCTCATGACAGAGTTTCAGACTCTCAGACAAAGAATACAAGATGAATATCGTGAGGTTGTAGAGAGAAGAGTTATCACAGTTACCGGAACTAGGCCAGATGATGAGACGATTGACCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGCAGGCAATTCTTGAAGCAGGCCGAGGACAGGTCGTGAGCACTGTAGAAGAAATTCAGGAGAGACATGATGCTGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTGTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAGTGCTAAGAAACTCCAGAAGAATTCTCGAAAATGGATGTGCATTGCCATCATCATCCTGTTAATAATAGTAGCTATCATAGTTGTTGGCGTTCTGAAACCTTGGAAGAATTCTTAG 924 0.4026 MNDLLTDSFVSEANHGQPSRQGDIEMGLQDQRSSSDMGMEAFNKQIQDADKQIEKVSALLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRENLNNRQKPGCEKGTGIDRARMNMTNSLTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQSAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLKPWKNS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03514 307 FunFam Syntaxin 132 34 163 - -
Mepo6g03514 307 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Mepo6g03514 307 CDD SynN 39 196 IPR006011 GO:0016020
Mepo6g03514 307 Pfam SNARE domain 245 297 IPR000727 -
Mepo6g03514 307 FunFam Syntaxin 132 202 302 - -
Mepo6g03514 307 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Mepo6g03514 307 PANTHER SYNTAXIN 39 290 IPR045242 -
Mepo6g03514 307 Gene3D - 34 163 - -
Mepo6g03514 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Mepo6g03514 307 SMART SynN_4 34 160 IPR006011 GO:0016020
Mepo6g03514 307 Coils Coil 39 76 - -
Mepo6g03514 307 CDD SNARE_syntaxin1-like 208 269 - -
Mepo6g03514 307 SMART tSNARE_6 204 271 IPR000727 -
Mepo6g03514 307 Gene3D - 203 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03514 Mepo-Chr6 47380125 47383739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03514 1 304 SNARE and Associated Proteins AT3G03800 61.842 1.26e-123 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03514 K08486 - gmx:100800991 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03514 6 47380125 47383739 Mepo6g03514 6 47380125 47383739 ECH