Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03509 ATGCAAGCTGGTTTAATGATTCCAGCTAGTAACATGCATTCAATGATCGGAAGAAACAACAATAACGTTGGTGTCTTTGGTTTATCTTCATCTCTCTCTCTATCCCAGAAAATGTTCCAGCCAAATCTAATGGAAGCTGGACAACATCATCAACTTCTGCCATTTGACATGACACAAAACAACAACAACAACAACAACACTTCAGAAAGTGATGTTCCAAGAATCCGTGAAGATGAATTATTCGACAGTGCTACAAAATCTGGTAACAGTGAAAATCAAGAAGCTGCTAATTCTGGTGAAGATCAAGAGCCTCGTGCTAAGAAGAAACGTTATCACCGTCATACACAGCATCAGATCCAAGAAATGGAAGCGTTTTTTAAGGAATGTCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGCAGAGAGTTAGGGTTAGAGCCATTACAAGTGAAGTTTTGGTTTCAGAACAAACGTACTCAAATGAAGACTCAACAGGAGAGGCATGAGAATACTTCACTTAGAACCGAGAATGAGAAACTTCGTGCAGATAACATGAGATTTAGAGAAGCTCTTAGTAATGCTTCTTGTCCTAACTGTGGTGGACCAACTGCGATAGGAGAAATGTCGTTTGACGAACATCACTTGAGGCTCGAAAATTCTCGCCTTAGAGAAGAGATTGATAGGATATCTGCCATTGCTGCCAAGTACGTAGGGAAGCCAGTGGTGAGCTATCCACTACTCTCTCCTTCATCGGTTCCTCCTCGTCCTCTAGAACTCGGCATTGGTGGTTTTGGAGGACAACCAGGAATGGGAGGAGATATGTATGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCTACTGAAGCTGATAAACCAATGATAATTGAGCTAGCTGTTGCTGCTATGGAGGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTGCCTACACTTGAAGGAGGTTCCATACTCAATGAAGAGGAGTATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAGTGTGAAGCTTCAAGAGAATCTTCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTTTTTTCTGGCATTGTCTCAAGAGCAATGACATTGGAAGTGCTATCAACTGGGGTAGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCAGAACTACAAGTACCTTCACCACTTGTTCCAACTAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAGCATGCTGATGGAACTTGGGCAGTAGTGGATGTTTCTTTGGACAATTTACGCCCTAGTCCTTCTGCCAGATCAAGAAGAAGGCCTTCTGGTTGCTTGATTCAAGAAATGCCCAATGGCTACTCAAAGGTTATATGGGTTGAGCATGTTGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGTTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACAAACATTCCCACAGTCGATGTTGGCGTGATAACAAATCAAGATGGGAGAAAGAGTATGTTGAAACTAGCTGAAAGAATGTGTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACAGCACACACGTGGACAACACTTTCGGGCACAGGAGCTGATGATGTAAGGGTTATGACCCGTAAGAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTTCTAAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCAAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGTACGGATACAACAGGGTCATTTGTGATATATGCACCTGTAGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCTGGATTTGCTATACTTCCAGATGGTACAACCACAAATGGAGGAGGTGTTGGTGAAACTGGACATGGTGGTGGATCTCTATTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCGACGGCAAAACTTTCTCTTGGTTCGGTTGCTACGGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCTGGTGAAGTTGCTTGA 2334 0.4199 MQAGLMIPASNMHSMIGRNNNNVGVFGLSSSLSLSQKMFQPNLMEAGQHHQLLPFDMTQNNNNNNNTSESDVPRIREDELFDSATKSGNSENQEAANSGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTSLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENSRLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGFGGQPGMGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLPTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRESSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARSRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTNGGGVGETGHGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03509 777 MobiDBLite consensus disorder prediction 55 70 - -
Mepo6g03509 777 CDD homeodomain 108 166 IPR001356 GO:0003677
Mepo6g03509 777 Pfam START domain 299 517 IPR002913 GO:0008289
Mepo6g03509 777 MobiDBLite consensus disorder prediction 55 117 - -
Mepo6g03509 777 Pfam Homeodomain 108 163 IPR001356 GO:0003677
Mepo6g03509 777 CDD START_ArGLABRA2_like 293 516 - -
Mepo6g03509 777 Coils Coil 171 191 - -
Mepo6g03509 777 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Mepo6g03509 777 FunFam Homeobox-leucine zipper protein GLABRA 2 298 516 - -
Mepo6g03509 777 SMART HOX_1 106 169 IPR001356 GO:0003677
Mepo6g03509 777 SUPERFAMILY Bet v1-like 289 519 - -
Mepo6g03509 777 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Mepo6g03509 777 Gene3D - 92 181 - -
Mepo6g03509 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 105 772 IPR042160 -
Mepo6g03509 777 FunFam Homeobox-leucine zipper protein HDG1 92 181 - -
Mepo6g03509 777 SUPERFAMILY Bet v1-like 537 769 - -
Mepo6g03509 777 ProSiteProfiles START domain profile. 289 520 IPR002913 GO:0008289
Mepo6g03509 777 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Mepo6g03509 777 Gene3D - 344 514 IPR023393 -
Mepo6g03509 777 SMART START_1 298 517 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03509 Mepo-Chr6 47275910 47282517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03509 38 777 Homeobox Transcription Factor Family AT1G05230 77.285 0.0 1146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo6g03509 START 3.2e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03509 K09338 - gmx:100809556 1293.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03509 6 47275910 47282517 Mepo6g03509 6 47275910 47282517 ECH
Mepo6g03509 6 47275910 47282517 Mepo2g01495 2 22264981 22269449 PCT