Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03471 ATGGACGAGGTTCCTGTGATTGAAGAGAATGAAACGAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTTGAAGGTGGAATTCAGGATGCTTGTGATGATTCTTGTAGTATATGTCTTGAAGACTTCATCGACAGCGATCCTTCTACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAATGTATTCTCGAATGGTGTCAGAGGAGCTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTCAAGGATCCAACGGGCCAGGAATTGCTCGAGGCAGTTGAGAGAGAGCGGAACATTAGGTTCAATCCGACTAGAAATGCCACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTCGAAGAGCGTATTCTCCAACACTTTGCTGCTGCAGCAGCAATGGGGCGAGCACGCCATATTGCTAGAAGGGAAGGCCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACAGTATTTGGTATTTTCAGCTCATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCCTCCCCACCTCAGAGGGGGGATGGTGAACAGACTCCTGCGACCGGAGAAGAACCACCACAGCTCACTTCAGTTCCTCCAGTTCAAACCGACCAGGTTTCTGCTTCAGGATCTGGGTCTGCTGCTCTTGCTACTGACAATCAGGGATTATCTTATAACAGCAGGAGATCTCCTAATCAGTCTTCTCCAAGTAGCCAAGACAGGGCAGGACCATCAGAACTCCAGTCATTTTCAGAATCTCTGAAATCTAAACTAAATGCCGTGTCTACGAGATACAAAGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAAAGGTGGTTCTCTCGGACTAGCCCTATGTCTGATCTTGGATCTGAAGTTAAGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGCTTGGAGACCAGAGACAATAATAGAACCAGTAGCGATACTGCTCCAAGTAACTTGGAAGATGGCCCAATTCAGGGATCAAGTGATCAGCATTTAACAGACACTGAAAGGGACAGTCCTTTGAGAGACAATAACTCAAAAACATCTTGCACTGCAGGTTCTAGTTCAAATTAA 1149 0.4656 MDEVPVIEENETKSEAHLTSAAAFVEGGIQDACDDSCSICLEDFIDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTGQELLEAVERERNIRFNPTRNATIFHHPTLGDFELQHLPVGANDADLEERILQHFAAAAAMGRARHIARREGQRNRSSAQGRPQYLVFSAHPNSPPMAPASSSPPQRGDGEQTPATGEEPPQLTSVPPVQTDQVSASGSGSAALATDNQGLSYNSRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRTSPMSDLGSEVKREVNAGIATVSRMMERLETRDNNRTSSDTAPSNLEDGPIQGSSDQHLTDTERDSPLRDNNSKTSCTAGSSSN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03471 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Mepo6g03471 382 FunFam E3 ubiquitin-protein ligase RHF2A 8 111 - -
Mepo6g03471 382 Pfam Ring finger domain 35 77 IPR001841 -
Mepo6g03471 382 MobiDBLite consensus disorder prediction 204 284 - -
Mepo6g03471 382 SUPERFAMILY RING/U-box 30 84 - -
Mepo6g03471 382 MobiDBLite consensus disorder prediction 174 382 - -
Mepo6g03471 382 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Mepo6g03471 382 SMART ring_2 37 77 IPR001841 -
Mepo6g03471 382 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 86 - -
Mepo6g03471 382 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03471 Mepo-Chr6 46898011 46901680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03471 34 85 C3H Transcription Factor Family AT4G00335 46.154 3.53e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03471 K19043 - gmx:100780275 599.356