Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03465 ATGTCAATGGATATGAATATGATGGCAACAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTAGCGGTTAGTGTTCCATGCAGTAGCTTGCTGACTATAGTGACAGTTAGATGTGGGCACTGTGCTAATTTGCTTTCTGTTAACATGGGAGCAGCATCACTTCAATCTTTTACTCCTCAACAAGATCACCCTCAGAAACAGCAGCTTATAAACTGTCATCAAGAAGCAAGCAGGAAGGAAGTTGTAGGATCATCATCATCTTCTTCTTCAAAATGCAAAGCATTTCAGCCTTTAGTCCATGAGCAACCTAGGACTCCTCCAATTCGTCCTCCAGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCATTTAGCACAGCAGCTAAAAACTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGTTGGATGGTAGCAAGCAAGCAAAGTTGGACCATGGGGTTGGGGAAGCTACTCAAAAGTCTAACGGATTCTATTGA 579 0.4162 MSMDMNMMATNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGAASLQSFTPQQDHPQKQQLINCHQEASRKEVVGSSSSSSSKCKAFQPLVHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDHGVGEATQKSNGFY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03465 192 Pfam YABBY protein 10 167 IPR006780 GO:0007275
Mepo6g03465 192 CDD HMG-box_SF 121 157 - -
Mepo6g03465 192 SUPERFAMILY HMG-box 105 160 IPR036910 -
Mepo6g03465 192 PANTHER PROTEIN YABBY 6-RELATED 7 176 IPR006780 GO:0007275
Mepo6g03465 192 FunFam Axial regulator YABBY 112 182 - -
Mepo6g03465 192 Gene3D High mobility group box domain 105 163 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03465 Mepo-Chr6 46849398 46855866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03465 1 192 C2C2-YABBY Transcription Factor Family AT1G08465 61.735 1.43e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mepo6g03465 YABBY 1.4e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03465 K25796 - gmx:100785458 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03465 6 46849398 46855866 Mepo2g01567 2 23342198 23349907 PCT