Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03453 ATGGATGGAATTGATGTTCCTTCACATTTTCTTTGCCCAATTTCCCTACAACTTATGAAAGATCCTGTCACACTTTCCACAGGAATTACCTACGATAGAGAAAACATAGAAAAATGGTTATTTTCATTCCAAAACAATACTTGTCCTGTTACAAAACAAACCTTATTAGAAACCGATCTTAATAACCTTATACCAAACCATACTTTACGTCGTTTGATTCAATCTTGGTGTACCCTTAATGCTTCATTTGGTGTTGAACGTATTCCAACACCAAAATCACCAATAGACAGAACACAGATTCTTAAACTAATCAATGAAGCAAAGAAATTCCCAGAAAAACAACTCAATTGTCTCGTAAAGCTTCGTTCTATCGTCTTTGAAAGCGAAAGGAACAAAAAATGTTTGGAATCTGCAGGTGCAATAGAGTTTCTAGCTTCAACCATGAAGAACAATTTAAATTCAAGTTCTCTGAGGGAAGCTGCTATTGAAATTTTGTTTCATCTTAACCCTTCTGAAGAACATGTTAAGAATCTGATAAGCAATGAAAGCATTCAATTTATTGAGTCATTGTTTCATGTTTTGAAGATTGGAAGCTACCAATCTAGAGGTTATGCAACAATGCTGTTGAAATCGGCATTTGAAGTATCCAATCCGATTCAATTAATAAGCGTACAAAAGGCGATTTTCGAAGAGATAATGAGAGTGCTAGTTGATAAGATTTCACAACAAGCTTCAAAAGCTGCATTGAAACTACTTCTGGAGCTTTTACCATGGGGAAGAAACCGAATTAAAGCGGTTGAAGGCGGCGCGGTTTTAGTCCTAATCGAGCTTCTTTTCGATGTTTCGGAAAGAAGGGTTTGTGAATTGATGCTAATAGGTTTGGATCAACTTTGTGGTTGTGCAGAAGGGAGAGCAGAATTGTTGAATCATGGAGCAGGATTGGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCAAGTGATAGAGGTGTTAGAATTATGAGTTCTATTTGTAGGTATTCTGCAAATTCTAGAGTTTTACATGAAATGTTGCATGTTGGAGCTGTTTCAAAGTTGTGTTTGGTGCTTCAAGTTGATAGTAATTTTAAGACAAAAGAGAGGGCTAAGGAGATACTCAAATTGCATTCTTCTGTTTGGAAGAATTCTACATGTATTCCTGTTCCATTGTTATCTTCTTATCCATGA 1212 0.3597 MDGIDVPSHFLCPISLQLMKDPVTLSTGITYDRENIEKWLFSFQNNTCPVTKQTLLETDLNNLIPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQILKLINEAKKFPEKQLNCLVKLRSIVFESERNKKCLESAGAIEFLASTMKNNLNSSSLREAAIEILFHLNPSEEHVKNLISNESIQFIESLFHVLKIGSYQSRGYATMLLKSAFEVSNPIQLISVQKAIFEEIMRVLVDKISQQASKAALKLLLELLPWGRNRIKAVEGGAVLVLIELLFDVSERRVCELMLIGLDQLCGCAEGRAELLNHGAGLAIVSKKILRVSHVASDRGVRIMSSICRYSANSRVLHEMLHVGAVSKLCLVLQVDSNFKTKERAKEILKLHSSVWKNSTCIPVPLLSSYP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03453 403 Gene3D - 96 393 IPR011989 -
Mepo6g03453 403 SUPERFAMILY RING/U-box 4 80 - -
Mepo6g03453 403 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Mepo6g03453 403 CDD RING-Ubox_PUB 7 60 IPR045210 -
Mepo6g03453 403 PANTHER WDSAM1 PROTEIN 4 395 IPR045185 GO:0061630
Mepo6g03453 403 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Mepo6g03453 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Mepo6g03453 403 SUPERFAMILY ARM repeat 110 382 IPR016024 -
Mepo6g03453 403 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Mepo6g03453 403 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03453 Mepo-Chr6 46662915 46664144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03453 4 403 U-box Gene Family AT2G35930 53.713 5.50e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03453 - - gmx:100778012 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03453 6 46662915 46664144 Mepo2g01588 2 23669780 23670946 PCT