Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03407 ATGTATCATCATCATCATCAAGGAAAAAATATTCACTCTTCTTCAAGAATGTCAATACCATCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGTTCTAGTGATTCAGGACTTGTGCTCTCAACTGATGCAAAACCTAGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCAGTTAATCAGTTAGGCGGAGCGGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGAATTCCAGGGCTTACCTTATATCATTTAAAGAGTCATCTTCAGAAGTACAGATTAAGCAAGAATCTGCATGGACAAAGCAGCAGTAATGTGACACACAAAATAAACACACATGCAGCTTCAGTAAGTGATGAGAGACTTTCTGAAACCAATGGAACTCACATGAATAAATTAACCCTTGGACCGCAGACTAATAACAACAAAGATTTGCACATAAGCGAGGCGCTGCAAATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTAAGGATAGAGGCTCAAGGAAAATACCTTCAATCAGTGCTCGAAAAAGCTCAAGAAACACTTGGTAGACAGAATTTAGGAATTGTAGGGCTTGAAGCAGCTAAAGTTCAACTATCCGAGCTTGTGTCAAAAGTATCCTCACAGTGTCTGAATTCAACATTTTCAGAGATGAAAGAGTTACAAGGATTTTGTCCTCAACCAAACGACGGCTCGATGGACAGTAGTTGCTTAACATCGTCTGACCGATCACAAAAGGAACAAGAGATCATTCAAAATGGAGGGTTTGGATTAAGACACTTCAACAATAATAACAACCATGTGTTCATGGAAAGAAAAGAACAACAAGCAACAGAATTAGCAGGTTCTGTTCAAAACCTTAGAAACAATGAAGTACTAAAATGGTGTGTTGAGGAAGTGAAAAAGAACAGTAATTTTCTAACTCCATTAGGAAATAATAATGAATTAGAAAGAAATCATGGAAATTTGTCTATGAACATTGGAGTTGAGAATCATTCAGATATTGGTGAGTTTCAACAAAGGAACACTGCAAGATTGGATCTAAACAGTCGTGGAGATAATAATGAAGGTGCTACAACTTGTAAACAGCTTGATTTGAATAGGTTCAGTTGGAACTGA 1167 0.3787 MYHHHHQGKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSSSNVTHKINTHAASVSDERLSETNGTHMNKLTLGPQTNNNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQPNDGSMDSSCLTSSDRSQKEQEIIQNGGFGLRHFNNNNNHVFMERKEQQATELAGSVQNLRNNEVLKWCVEEVKKNSNFLTPLGNNNELERNHGNLSMNIGVENHSDIGEFQQRNTARLDLNSRGDNNEGATTCKQLDLNRFSWN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03407 388 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Mepo6g03407 388 Coils Coil 286 306 - -
Mepo6g03407 388 FunFam Myb family transcription factor 44 102 - -
Mepo6g03407 388 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Mepo6g03407 388 Coils Coil 153 173 - -
Mepo6g03407 388 Pfam MYB-CC type transfactor, LHEQLE motif 151 197 IPR025756 -
Mepo6g03407 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 289 IPR044848 GO:0003700
Mepo6g03407 388 Gene3D - 44 102 - -
Mepo6g03407 388 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Mepo6g03407 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03407 Mepo-Chr6 46292586 46294630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03407 77 388 G2-like Transcription Factor Family AT3G04030 49.552 1.60e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mepo6g03407 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03407 - - gmx:100810396 534.258