Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03395 ATGTATAGCAATTTCAAGGAACAAGCAATAGAGTACGTGAAACAAGCCGTACACGAAGACAATGCCGGAAACTATTCAAAAGCGTTTCCTTTATACATGAACGCTTTAGAGTATTTCAAAACCCATTTAAAGTACGAAAAAAACCCTAAAATCAGAGAAGCTATTACGCAGAAATTCACCGAGTATTTACGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGATGGTGGGCCAGGGCCAGCTTCTAATGGCGATGCGGCCGTTGCTACAAGGCCGAAGAGTAAGGGGAAGGATGGTGGTGGGGAGGGTGGTGGAGGTGGTGAAGGGGAGGATCCGGAACAGGCGAAGCTTAGAGCGGGTTTGAATTCCGCGATTATTAGGGAAAAGCCGAATGTTAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCTAAACAGGCTTTGCAGGAAGCTGTTATTTTGCCTGTCAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGAAAATCATATTTAGCTAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAACCTTTTTCAAATGGCTCGAGAAAGTGCCCCCTCCATCATATTTGTTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATTTATATTCCACTACCAGATTTGAAGGCCCGCCAACACATGTTCAAGGTGCATCTTGGAGATACTCCTCATAATTTAACTGAAAAGGATTATGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGATATATCTGTTTGCGTGAAGGATGTTCTATTTGAACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAGTCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGCGCAGTTCAAACTACAATGACGGATCTTGCTACAAAAGGACTTGCTTCAAAGATCCTTCCACCCCCCATTACAAGAACAGATTTTGAAAAGGTTCTTGCTAGACAAAGGCCTACAGTAAGCAAAAGTGACCTTGAAGTTCATGAGAGATTCACAAAGGAGTTTGGAGAAGAAGGTTAA 1317 0.4336 MYSNFKEQAIEYVKQAVHEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKGKDGGGEGGGGGEGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTEKDYEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMTDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLEVHERFTKEFGEEG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03395 438 ProSitePatterns AAA-protein family signature. 273 292 IPR003960 GO:0005524|GO:0016887
Mepo6g03395 438 CDD RecA-like_VPS4 129 299 - -
Mepo6g03395 438 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Mepo6g03395 438 SMART smart 2 79 IPR007330 -
Mepo6g03395 438 FunFam vacuolar protein sorting-associated protein 4A 303 418 - -
Mepo6g03395 438 MobiDBLite consensus disorder prediction 73 113 - -
Mepo6g03395 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 434 IPR027417 -
Mepo6g03395 438 Gene3D - 6 75 - -
Mepo6g03395 438 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Mepo6g03395 438 PANTHER AAA DOMAIN-CONTAINING 19 436 - -
Mepo6g03395 438 SMART AAA_5 167 303 IPR003593 GO:0016887
Mepo6g03395 438 Pfam ATPase family associated with various cellular activities (AAA) 172 301 IPR003959 GO:0005524|GO:0016887
Mepo6g03395 438 Pfam Vps4 C terminal oligomerisation domain 371 435 IPR015415 -
Mepo6g03395 438 Gene3D - 130 426 IPR027417 -
Mepo6g03395 438 FunFam Vacuolar protein sorting-associated protein 4 130 310 - -
Mepo6g03395 438 SUPERFAMILY MIT domain 2 81 IPR036181 -
Mepo6g03395 438 CDD MIT_VPS4 4 77 IPR045253 -
Mepo6g03395 438 Gene3D - 303 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03395 Mepo-Chr6 46161053 46166190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03395 166 359 Calmodulin-binding Proteins AT3G56690 36.224 8.27e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03395 K12196 - gmx:100806836 815.839