Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03366 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGAGAAACTATCAAGATTGACCCATATGACCTTGAGGCAGCAGCTATTCACCTTTCTCAGGTTGCACTTGGTGAAGCAAAGAAAGACAAACCAAATGAGTCTGTGGTTATTTACCTCAAATTTGGTGAACAGAAGCTTGTTTTGGGAACCCTAAACAGGGACAAAATTCCTCAGATATCTCTTGATATTGTTCTTGAAAAGGAATTTGAGCTATCTCACAATTCCAAATCTGCCAGTGTTCATTTCTGTGGATACAAAGCTTATTTTGAGGATGATGAGAGTGAGGAAGAAGGTGAAACTGATAGTGAAGATGAAGACATCCCATTGATTACCACAGAGCAGAATGGAAAACCAGAACCAAAAGCAGAGGAGTTGAAGGTTTCTGAACCTAAAAAGGCTGATGCTAAGATTGCTGCACCTGCAAAACATGTGAAGGTTGTTGATCCAAAGGATGAGGAAGATGAAGATTCTGATGATGATTCTGATGAATCTGGTGATGAAATTGGAAGCTCTGATGATGAGATGGAGAATACCGATAGTGAAGATGAAGATGAGAGTGATGAGGATGATGAGGAAGAGACTCCTGTGAAGAAGGTTGACCAGGGAAAGAAGAGGGCCAATGAATCTGCTTCAAAAACTCCAGTTTCTTCCAAGAAATCAAAAAATGCCACTCCTGAGAAGACTGATGGTAAGAAAGCCGGACATACAGCAACTCCTCACCCTAAGAAAGGTGGAAAGACTCCTAACAGTGATGCAAAAACTCCCAAGTCTGGAGGACTCTCTTGCAGCAGTTGCAGCAAGACATTCAACTCTGAAACTGGACTGCAACAACATAGCAAGGCCAAGCATGCTGCTAAGTGA 891 0.422 MEFWGAEVKVGETIKIDPYDLEAAAIHLSQVALGEAKKDKPNESVVIYLKFGEQKLVLGTLNRDKIPQISLDIVLEKEFELSHNSKSASVHFCGYKAYFEDDESEEEGETDSEDEDIPLITTEQNGKPEPKAEELKVSEPKKADAKIAAPAKHVKVVDPKDEEDEDSDDDSDESGDEIGSSDDEMENTDSEDEDESDEDDEEETPVKKVDQGKKRANESASKTPVSSKKSKNATPEKTDGKKAGHTATPHPKKGGKTPNSDAKTPKSGGLSCSSCSKTFNSETGLQQHSKAKHAAK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03366 296 Gene3D Nucleoplasmin core domain 1 103 - -
Mepo6g03366 296 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Mepo6g03366 296 MobiDBLite consensus disorder prediction 161 204 - -
Mepo6g03366 296 MobiDBLite consensus disorder prediction 127 160 - -
Mepo6g03366 296 FunFam Histone deacetylase HDT1 1 101 - -
Mepo6g03366 296 MobiDBLite consensus disorder prediction 232 246 - -
Mepo6g03366 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 296 IPR013087 -
Mepo6g03366 296 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Mepo6g03366 296 MobiDBLite consensus disorder prediction 101 296 - -
Mepo6g03366 296 MobiDBLite consensus disorder prediction 260 288 - -
Mepo6g03366 296 MobiDBLite consensus disorder prediction 101 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03366 Mepo-Chr6 45868532 45871888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03366 1 96 C2H2 Transcription Factor Family AT3G44750 51.042 1.40e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g03366 NPL 2e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03366 - - gmx:100792094 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03366 6 45868532 45871888 Mepo6g03366 6 45868532 45871888 ECH
Mepo6g03366 6 45868532 45871888 Mepo2g01749 2 25578905 25580679 PCT