Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03358 ATGAAGCTTCCGCGAAAATCCAAATCAACCGAACCACCACCACCACCACCGATGGCGCCACCATCAGGGGATCCTCCGTCGGAACCACCGAAAAAGAGAGGTCGACCGCGGAAACAGAGAAGAAAAGAGAAAGATACTGTAACCGTTGAATTGAAGAAGCCAATTGTATTGATTGGACGATACGTGTTGAAAGAGTTTTCAGAAAGCGTTGTTCTAATCGGAAGAGTTTTGAGTTACAAAATCGGTTTATACAGAGTCGACTTCGAGAACGGTGATTTTGAGGATTTGGACAGTAGTTCTATTCGTAGAATTCTTATCGAGGATTGCGATTTTGACGACGATTTGATTCGACGGAAGAATGAATTAGATCAATCGTTGTTGAATAAGATTATTGAAGAATCGAGTGAATTGAATGTGGAAGATCAAGAGGAATCACACGATGTGATGGAGGTTGATTCTAGGGATTTGTGTTCGGATGCTGAGACGCCTGTTGATTTGCCTGTGGCATTAGAATTACCGCCACAGTTGGAGTTGCCGCCGTCTTCTGGAACTATTGGTGTGCCAGAGAAGTATGTTTCGTACTTGTGTTCGGTATATGGATTCTTACGATCGTTCAGTATTCGACTGTTTCTTTATCCGTTTAGTTTGGATGATTTCGTCGGTGCTCTTAACTGTCGGGTTCCTAATACGTTGCTTGATGCTGTTCATAATTCTTTAATGCGTGCTTTGAGACGTCATCTTGAACATCTTGCTTCCGAGGGATCGAAGATTGCATCGAGATGCCTTAGGTGCAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAATTGAATATTTAGCAGTTAATGGATACATTAAGGGGTCTGAATGGAAAGGATTCTACGACGAGATTTTTAACGGCGATTATTACTCATTGCCTGCAAGTAGGAAGTTAGTAACATTGCAAATTCTTTGCGAGAATGTTTTGGAGTCTGAGGAGCTTAAAGCTGAAATGAACATGCGTAAAGAGTCAGTGCTCGGGAAGAATTACGATGCTGAGGACAGTCCTCCTGCTGAAAATGGACCTAAAAGAGTCCATCGACGATATGCCAAAACTACCGATTGCCAGGATGAAGAACCTACAAAGTTTGTTTCAAAATTAGATGCTGTGAACTTACCTGCTAATTCTGAGGACGAGGTTGACAAGAATGGAGATGAATGTCGCCTCTGTGGCATGGAAGGGACCTTGCTTTGTTGTGATGGATGTCCCGCTGCTTATCATTCAAGGTGTATTGGTGTGTATAAGATGTATATACCAGAAGGGCCATGGCATTGTCCAGAATGCAAAATAAATATGATTGGGCCAACAATTGCACGTGGAACATCTCTTAAAGGGGCTGAAACATTTGGTAATGATTTGTACGGGCAGCTTTTCCGGGGTACTTGCGACCACTTACTTGTGCTAAATGTCAACAGTGCCGAGTTTTGTCATAAGTACTACAATCAGAATGACATTCATAAAGTTATTCAAGTGCTTTATGCTTCTGTGCAACATAGACAAGTGTACTCCGGTATTTGCATGGCGATGTTACAGTACTGGAATATTCCAGAAAGCTCTTCACACCTATGTGTTCCAAACGGAACACATCTTAACTCAAGTTCAAAGATAGATGAAAATGGCCATAAAGGAGTTACCTTGGGGAAAGCAGAATATGGTCCGGATTCTGTTGTTTTGACTATTAACCACCAGTCTGACATGAGTTTCCCAAATCCTGATAACAAGTCAACTGCAGCCATTTCTTCCAAGTGCTCCTTGGTAAGCAACCGATTTATTAATTATGGGAATGCAAATGACACTAGTCTGCCTTTGCAAACTAACGGTGACCAGACTGGCTTTGGAAAGTGCAAAGGAAATGATTTTGTGTATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATAACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAATTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCTGACTTGAAGAAAGCTACACCTGACAACCCTAACTTGGTAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCATATTCTGACAAGAAGCTTGGGGAGGTTATAAGAGAGAGGTGTAGCTGGTGTCTTTCTTGTAAATCCCCTGTTTCAAGCAAGAAAGGGTGCATGTTAAATCATGCTGCTATATATGCTACGAAAAGCGCCGCCAAAATACTTTCCGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCCAGCATTTCAACATATGTCATATATTTGGAGGAAAGCTTACATGGTTTAGTAGATGGGCCCTTTCTTAGTGAAAACTATAGAAAGCTATGGCGTAAACAAATGGAAAGGACCACATCATTTAGTAACATAAAGCCACTTTTACTTAAACTTGTGGAGAACATTCGCACAATTGCTTTTTCTGATGACTGGGTGAAGCTGACGGATGAGTGGTTGGTTGAATCTCTCACAATCCACAGTGATACATCTACTCTTGGAACAACACAGGAACGTTCATCATGTGACAGATGTAGAAAACAATTACCTATCAAATATACAGTCAACAAATGCCGTGAAAACTTTGGCTGGCGGAATGGTAAATTTACCAAATCTTTATTTCAGAAAGCTGCATTGCCAAAATTCATGGTCAGAAAAGCAGCTCGGCAAGGTGGTTTGAGGAAAATTTTGGGTATTGTCTATCCTGATGATGTCTCTGAAATTCCTAAAAGAAGCCGACAGCTGGTTTGGAGAGCTGCCGTTGAAATGAGTAGAAATGCATCACAGCTTGCACTTCAGGTTCGATATCTGGATTTTTACATCAGATGGATTGATCTGATTCGGCCGGAGTATAACCTCCAGGATGGAAAAGGTCAAGATACTGAAGTTTCTGCTTTTAGAAATGCAAGTATTTATGACAAAAAGTTTGCAAAGGGAAAAACATCCTATGCCATAGCTTTTGGGAGCCAAAAGCATATTCCTTCTCGGGTAAGGAAGATTGCTGAAATAGAAGAAGTGCCAGAAGGAGAGAAGTTATGGTTTTCTGAAAAACGCATTCCTTTATATCTGGTAAAAGAGTATGAAGTAAGAAACAGAAAAGAGTCATCTCATAAAGATAACTTGAATATCACATCTCAGTGGCACAAAAGGCGGTTGAATGCTATCTGGAAGGACATATTTTCTTACCTCACGTGCAAGAGAGACAATTTGGACTTGTTATCATGTTCTGTATGTAAGCAGTGTGTTTCATTTAGGAGTGCTCTCAAGTGCAGTGTATGTAAAGGTCATTGTCACGAGGGCTGTTCAATAGATTCAACATTCTCTACCTATACAGATATTGAGTTCTTGGCCACATGCAAACAATGTTATCATACCAGATTACCTACTCAAAAAGAGACCGTTAACAAATCTCCTAACAGTACCTTACTTTTAAAAGGGAGCTCTTTGACAATTTTGAAGGAACCAGTGCCTAAATGTGATGATCAAATACCGAGATCTACCAGGGAAAAAGATTGTCGTCCCGACATGAAAAAAGTTGCTTTCCATTCCCCTCTTGAATCAAAAAGCAGTGGCAAAAAATCCTCTTGGGGTATTATATGGAAAAAGAATAACAATGAAAATACAGGCATTGATTTCAGGCTAAAAAAAGTACTTCTGAAGGGACGTTCAAGCTTGCCTCAATTGGAACCTGTTTGTCACTTGTGCCATAAGCCATATAGATCTGATCTAATGTATATAGGCTGTGAAACATGCACCCGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTATGTGCTGGGCTTCAAATGTTGCAGGTGTCGGAAGATAAAGTCGCCCGTGTGTCCTTACTCTGATTTGGTGCGCAAGGAGCAAGTTGGAGAGCAGTCAGGCTCATGGGCTTCCAAGAGGAAGCATTCTGGAGCAGGTTCTAGTTCTGAAACACTGGCTGACATTAGAGTATGTGAGCCTGCTAGTCCGGTTTTTCCCTCAGAGGCTGTTTCTAAACCAGAGAACAACCCACGTCCATTTTCTCTTTCAGATGTCGAACTGACTACAGAACCCAAGTTAGAGTTAGATGCAGAGAAGTCACATTCACAGGCTTCCAAGAAAAACCATTCTGGAGCAGATTCTGGAACACTGGCTGACACAAGAGTAAGCGAGCCTGCTACTCCTATCTTTCCAACAGAGGATGTTTCTAAACCAGAGAACAATCCTCCGCCGTTTTCTCTTTCAGATGTTGAACTGATTGCAGAACCCGAGTTAGATGCAGGCTTTGAGGGTAACACCATCTCTGGGTCAGGGCTTCAGAAAATACCAACGACGAGGTATTTTAAACCTGAGGGGGACAATAATAGCTCTTCTGGGGGTGAAGTTCGGCATGCTGAAATTTCAACACGGGATGAAATGGATAATCTGCCCGCAGAGTTTTTATCACCTTTCGTCGAACATGACTTTGTCTTCGCTGACTGCAATCTTCTGAGTGACCTTTAA 4566 0.4168 MKLPRKSKSTEPPPPPPMAPPSGDPPSEPPKKRGRPRKQRRKEKDTVTVELKKPIVLIGRYVLKEFSESVVLIGRVLSYKIGLYRVDFENGDFEDLDSSSIRRILIEDCDFDDDLIRRKNELDQSLLNKIIEESSELNVEDQEESHDVMEVDSRDLCSDAETPVDLPVALELPPQLELPPSSGTIGVPEKYVSYLCSVYGFLRSFSIRLFLYPFSLDDFVGALNCRVPNTLLDAVHNSLMRALRRHLEHLASEGSKIASRCLRCSEWSLLDTLTWPVFLIEYLAVNGYIKGSEWKGFYDEIFNGDYYSLPASRKLVTLQILCENVLESEELKAEMNMRKESVLGKNYDAEDSPPAENGPKRVHRRYAKTTDCQDEEPTKFVSKLDAVNLPANSEDEVDKNGDECRLCGMEGTLLCCDGCPAAYHSRCIGVYKMYIPEGPWHCPECKINMIGPTIARGTSLKGAETFGNDLYGQLFRGTCDHLLVLNVNSAEFCHKYYNQNDIHKVIQVLYASVQHRQVYSGICMAMLQYWNIPESSSHLCVPNGTHLNSSSKIDENGHKGVTLGKAEYGPDSVVLTINHQSDMSFPNPDNKSTAAISSKCSLVSNRFINYGNANDTSLPLQTNGDQTGFGKCKGNDFVYMGCSYKPQSYINNYMHGDFAASAAAKLAILSSEDSRSEGHVSDLKKATPDNPNLVAKAFSLTASRFFWPYSDKKLGEVIRERCSWCLSCKSPVSSKKGCMLNHAAIYATKSAAKILSGLAPVRSGEGISPSISTYVIYLEESLHGLVDGPFLSENYRKLWRKQMERTTSFSNIKPLLLKLVENIRTIAFSDDWVKLTDEWLVESLTIHSDTSTLGTTQERSSCDRCRKQLPIKYTVNKCRENFGWRNGKFTKSLFQKAALPKFMVRKAARQGGLRKILGIVYPDDVSEIPKRSRQLVWRAAVEMSRNASQLALQVRYLDFYIRWIDLIRPEYNLQDGKGQDTEVSAFRNASIYDKKFAKGKTSYAIAFGSQKHIPSRVRKIAEIEEVPEGEKLWFSEKRIPLYLVKEYEVRNRKESSHKDNLNITSQWHKRRLNAIWKDIFSYLTCKRDNLDLLSCSVCKQCVSFRSALKCSVCKGHCHEGCSIDSTFSTYTDIEFLATCKQCYHTRLPTQKETVNKSPNSTLLLKGSSLTILKEPVPKCDDQIPRSTREKDCRPDMKKVAFHSPLESKSSGKKSSWGIIWKKNNNENTGIDFRLKKVLLKGRSSLPQLEPVCHLCHKPYRSDLMYIGCETCTRWYHAEALELEESKIFYVLGFKCCRCRKIKSPVCPYSDLVRKEQVGEQSGSWASKRKHSGAGSSSETLADIRVCEPASPVFPSEAVSKPENNPRPFSLSDVELTTEPKLELDAEKSHSQASKKNHSGADSGTLADTRVSEPATPIFPTEDVSKPENNPPPFSLSDVELIAEPELDAGFEGNTISGSGLQKIPTTRYFKPEGDNNSSSGGEVRHAEISTRDEMDNLPAEFLSPFVEHDFVFADCNLLSDL 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03358 1521 SMART PHD_3 1251 1299 IPR001965 -
Mepo6g03358 1521 SMART PHD_3 1094 1143 IPR001965 -
Mepo6g03358 1521 SMART PHD_3 403 446 IPR001965 -
Mepo6g03358 1521 CDD PHD_SF 1251 1298 - -
Mepo6g03358 1521 ProSiteProfiles Zinc finger PHD-type profile. 401 448 IPR019787 -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 1384 1435 - -
Mepo6g03358 1521 SUPERFAMILY FYVE/PHD zinc finger 1248 1305 IPR011011 -
Mepo6g03358 1521 Pfam DDT domain 192 246 IPR018501 -
Mepo6g03358 1521 ProSiteProfiles DDT domain profile. 189 249 IPR018501 -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 1470 1484 - -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 1319 1340 - -
Mepo6g03358 1521 SUPERFAMILY FYVE/PHD zinc finger 389 449 IPR011011 -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 1319 1338 - -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 1 46 - -
Mepo6g03358 1521 Pfam PHD-finger 404 446 IPR019787 -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 1395 1409 - -
Mepo6g03358 1521 PANTHER PHD FINGER FAMILY PROTEIN 140 1327 - -
Mepo6g03358 1521 SMART testlast3 189 249 IPR018501 -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 1449 1491 - -
Mepo6g03358 1521 ProSitePatterns Zinc finger PHD-type signature. 404 445 IPR019786 -
Mepo6g03358 1521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1241 1314 IPR013083 -
Mepo6g03358 1521 MobiDBLite consensus disorder prediction 8 27 - -
Mepo6g03358 1521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 451 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03358 Mepo-Chr6 45580203 45596860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03358 41 1384 PHD Transcription Factor Family AT5G35210 42.612 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Mepo6g03358 DDT 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03358 - - mtr:25487492 2631.28