Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03342 ATGGCGAAAGGAACCGATTCAGATGAGTTTATGGTTCTTTCTAGGGTTAGAACAGGTTTGAAACGAGAGTTTGCGTTTGCAATGAAGGCTCAATCTGAGATCGATGGTTCGTTGGGTCGAACCAGGGGTGGTAGTAAGAACCGGAATGAGGGTCCGGTTCAGGAAACGCCGGTTGGGAAAAGGGTAAAAAAAACCGGTTTAGATGATGTTATGAGTGAGGAAGAGGCTAAGAGTGATGTTGTTGATCTTGTTAGCGATGAAGAGGTTAAGAATGTTGAAAGGGAAAATGGGTTTTTGTCAAAATCTGATATTGATGTGAAGAGTGTTGAAACTGTGATTGATGAAGAAACCCTTTTGAAGGAAGAAGAAAAAGTTGTGATTGTGAATGAATTTGAAATGGAAACTGTTTGTGAAATCAAAGATGAAACCCTAGAAGATAAGGGTACCCTTTTGGAGGAAAAGGGTAATGTTGGTGGCAAAAGGAAAAAGAGGGTGTCGTTAGAAAAACCAGTTAGGAGGTTTACAAGATCAGCATTGAAGGAAAAGGATGAAGAGGTTAAGGATAATGCTGTTGTTGTTGGAGTTGATGTTGATAATGTTGGTGCTAATGTTGTTGAAAGCGAAAATGCGGTTTCTGGGGTTTCGCCGATTATGGTGACTCCGACGCCAATGAAATTGGGCAAGTCTGGTAAGAGGTTTCCTGTCAAGCTGAAGGATCTTCTGGCTACTGGGATTCTGGAGGGATTGAAAGTGAGATATGTCAAGGGACAGAAGGCGCGTAAACCGGGAGAAAAGGACTTACAAGGTGTGATTAAAGATGCTGGGATTTTGTGCTTTTGTGGGAGTTGTAAGGGGAATCAGGTTGTCTCGCCGTCCGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAACGTCCTCCGGAGTATACAAACCTTGAAAATGGAAAACTCCTTCGGGATGTCATGAATGCCTGTTCGAGTCTTCCGTTGGACACATTGGATGAAGTGGTCCAAATGGTCCTTGGTGATTTCACTATGCAGAATTCTAATATCTGTTTCAATTGCAGAGGGTCAATTTCTGAATCTAACAAGGGTGAGTCAAAACTAGTATGCAATCCATGCATGGAGTTGAAAGAGACTCAAACTAGCCAACTTCAAACAGCAGCAACATGTAGTAAAAGTATTACCCCAGTAGTTCAACCCAGATCACTAGAAACGGCAGTACTTCCAGAGTCATTAAATACTGAGATGGTGGTTCCAAAGTCATCAAACACTGAGATGGTGGTTCCAAACTCATCAAACACAAATATGGTTCGAGAGACATCAGACACAAATATGATTCCAAAGGCATTGAGTAATGGCATGAAGCAGAGTGCATCTGGCAAGAGTCGGGGAAAAATAACTAGAAAGGATCTGAGGTTGCATAAGTTGGTATTTGAAGAAGACGTGTTACCAGATGGAACTGAAGTTGCTTACTATTCTCATGGAAAGAAACTATTGGAAGGTTACAAAAAGGGTTATGGAATATTTTGTAGCTGTTGCAGTGCAGAGGTTAGTGCCTCTACGTTTGAAGCTCACGCTGGATGGTCATCTCGACGCAAGCCTTACCTGCACATATATACATCTAATGGAGTCTCACTACATGAGCTGTCCCTCTCTCTATCAAAAGATCGGAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTTCCTCTACCATGCATTCCCAGTGGTACTTGGTACTGTAAATATTGCCAGACTAATTTCCAGATGGAGAGTAATGCACAACGTAATGCAAATGCTCTGGCAGCTGGAAGGATTGAAGGCATTGATCCTTTAGAACAGATAAACCGACGATGCATTCGCATTGTCAAAAGTGTAGCTGTCGACCATGGGGGATGTGCCTTGTGTGGATGCCATGATTTCGTTAAAATATTTGGTCCTCGAACAGTTATTATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGGTGTTTGAAGGAGCACAACATGCAGAATTTAAAGGAGTTGCCTGAAGGGGATTGGTTCTGCAGCACGAGTTGCAGTCATATCCATTCTTCTCTAGTGAATTTGGTTGCTTCTGGGGAGAATAGTCTCCCAGATTCTATTCATAGTTTGATAAAAAAGAAGCATGACACCGGCGTTGAAGAGAAAGGTGCAGACACTGGCGTTGAAGGCACTGTCGTTCAAGAGAAAGGTGCAGACACTTGTGTTGAAGGCACTGTCGTTGAAGAGAAAGGTGCAGACACTGGCGTTGAAGGGAAAGGTGCAGGCAATGTCGTCGAAGAGAAAGGCGGAGACACTGGCGTCGAAGAGAAAGGTAGAGACACTGTTGAAGAGAAAGGTGCAGACACAGGTGCCGAAGAGAAAGGTGCAGACACCGTCCTTGAAGAGAAAGTTGCCGACACCGGCCTTGAAGAGAAAGCTGTAGACACCGGCGTTGAAGAGAAAGCTGCAGGCACCGGTGTTGAAGATAAATATGGAGACTCTGGTGGTGTTGAGAAAGATGTAGATACTGGTGTTGAAGAGAAAAGTGTAGAAACTGGGGTTGAAGAGAAAGGTGTTGATCCTGAAATTAAATGGAGGGTTCTGAACTGGAAGCTAGTTGCCTCAGGTGAAAATAAGCAATTGTCTGATGAATATAGGCAAGTGCTTTCGAAGGCTGTTGCCATCTTCCATGAGAGATTTGATCCTATAGTTGATTCGTCTTCTGGCCGTGATTTCATTCCGACAATGTTGTTTGGAAAGAACATCCGCGGGCAAGATTTTTCCGGAATGTACTGTGCAGTGCTCACTGTCAACCAAGTTGTTGTTTCTGCTGGAGTATTTCGTGTTTTTGGGCCAGAAGTCGCAGAACTTCCTTTGGTGGCGACAGTTTCTGAGTACCAAGGACAGGGTTACTTTCAATGCTTGTTTTCTTGCATTGAGAGACTACTTCAATCTCTAAGCGTGAAAAACCTTGTCCTACCGGCTGCCGATGAAGCTGAATCAATATGGACTAACAAATTTGGGTTTACAAAGCTCGAGCACGATGAGATCAACAATTACAAGAAGTTTTATCATATGATGATCTTTCAAGGGACCTCTGTACTACAGAGGCCTGTTCCAACACTACCAAGTACTTCTCAGGAGATTGTGTAA 3228 0.4328 MAKGTDSDEFMVLSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEGPVQETPVGKRVKKTGLDDVMSEEEAKSDVVDLVSDEEVKNVERENGFLSKSDIDVKSVETVIDEETLLKEEEKVVIVNEFEMETVCEIKDETLEDKGTLLEEKGNVGGKRKKRVSLEKPVRRFTRSALKEKDEEVKDNAVVVGVDVDNVGANVVESENAVSGVSPIMVTPTPMKLGKSGKRFPVKLKDLLATGILEGLKVRYVKGQKARKPGEKDLQGVIKDAGILCFCGSCKGNQVVSPSVFELHAGSANKRPPEYTNLENGKLLRDVMNACSSLPLDTLDEVVQMVLGDFTMQNSNICFNCRGSISESNKGESKLVCNPCMELKETQTSQLQTAATCSKSITPVVQPRSLETAVLPESLNTEMVVPKSSNTEMVVPNSSNTNMVRETSDTNMIPKALSNGMKQSASGKSRGKITRKDLRLHKLVFEEDVLPDGTEVAYYSHGKKLLEGYKKGYGIFCSCCSAEVSASTFEAHAGWSSRRKPYLHIYTSNGVSLHELSLSLSKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQTNFQMESNAQRNANALAAGRIEGIDPLEQINRRCIRIVKSVAVDHGGCALCGCHDFVKIFGPRTVIICDQCEKEYHVGCLKEHNMQNLKELPEGDWFCSTSCSHIHSSLVNLVASGENSLPDSIHSLIKKKHDTGVEEKGADTGVEGTVVQEKGADTCVEGTVVEEKGADTGVEGKGAGNVVEEKGGDTGVEEKGRDTVEEKGADTGAEEKGADTVLEEKVADTGLEEKAVDTGVEEKAAGTGVEDKYGDSGGVEKDVDTGVEEKSVETGVEEKGVDPEIKWRVLNWKLVASGENKQLSDEYRQVLSKAVAIFHERFDPIVDSSSGRDFIPTMLFGKNIRGQDFSGMYCAVLTVNQVVVSAGVFRVFGPEVAELPLVATVSEYQGQGYFQCLFSCIERLLQSLSVKNLVLPAADEAESIWTNKFGFTKLEHDEINNYKKFYHMMIFQGTSVLQRPVPTLPSTSQEIV 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03342 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 713 IPR013083 -
Mepo6g03342 1075 SMART PHD_3 567 608 IPR001965 -
Mepo6g03342 1075 SMART PHD_3 658 711 IPR001965 -
Mepo6g03342 1075 SUPERFAMILY FYVE/PHD zinc finger 555 608 IPR011011 -
Mepo6g03342 1075 ProSiteProfiles Zinc finger PHD-type profile. 565 610 IPR019787 -
Mepo6g03342 1075 MobiDBLite consensus disorder prediction 851 880 - -
Mepo6g03342 1075 MobiDBLite consensus disorder prediction 778 822 - -
Mepo6g03342 1075 CDD PHD1_AIRE 567 607 - -
Mepo6g03342 1075 ProSitePatterns Zinc finger PHD-type signature. 568 607 IPR019786 -
Mepo6g03342 1075 MobiDBLite consensus disorder prediction 35 62 - -
Mepo6g03342 1075 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 953 1039 IPR016181 -
Mepo6g03342 1075 PANTHER AUTOIMMUNE REGULATOR 52 1064 - -
Mepo6g03342 1075 FunFam PHD finger family protein 887 1063 - -
Mepo6g03342 1075 Pfam PHD-finger 568 609 IPR019787 -
Mepo6g03342 1075 MobiDBLite consensus disorder prediction 794 822 - -
Mepo6g03342 1075 SUPERFAMILY FYVE/PHD zinc finger 652 708 IPR011011 -
Mepo6g03342 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 626 IPR013083 -
Mepo6g03342 1075 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 554 631 - -
Mepo6g03342 1075 Pfam Tify domain binding domain 501 549 IPR032308 -
Mepo6g03342 1075 Pfam Tify domain binding domain 269 324 IPR032308 -
Mepo6g03342 1075 Gene3D - 892 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03342 Mepo-Chr6 45360079 45369198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03342 234 741 PHD Transcription Factor Family AT2G36720 42.644 4.55e-140 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo6g03342 TDBD 6.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03342 - - tpra:123896735 1583.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03342 6 45360079 45369198 Mepo6g03342 6 45360079 45369198 ECH