Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03335 ATGATTTCAAGGACAACACCTTTAGGGTTTGAAATTGGAAATCAAGGCCTACAAATGTTTCCTATGGTCACGGAAGATTTGATGCCATTGCCAAATTCCATGGAAGGAATTTCTAGTTCAACTTCACCCTCCAATTCCCTCCTCTTCAATCTCTCTACTCTCAAAGACAAGCTCAATCAAGTGCAAACTCTTGTTGGTGTCATTCTCTCCCCAAATCAGCAAGACTCCTCAACTTCCATGGCATTATCCTCAATGAAATCCACAATACAAGAAATCATAGTAACTTCCACATCAATGATGTTCACTTGCCAACAGATTGCTCTTAGTTTCCCTCAAGGTACCACTTCTATTAAATGCATAGCCCAAGAATTTCAAAAGCAGCAATCTAATATTCAATCAAATTTTGGCAACAATGACACAAGCATTGATCTTAGAGGTCAAAGTTTTATTTCTAATAATGAGTCAGAACCATTGGATTGGTTTGGGGAAAGCTATAATAGTAACATTAATTATAGGCTCAAGGATGATATTGATGATCAAAGGGTTGATCATGAAATTAGTGAAACCAATAATAGTATAAGAGGGTCTAATGAAGATATTTCAACGAAGAATAATTTTGATCGCGACGATACATGCTTAAAATTTGGGTCATCTTATAATTGGGTCGGCCCAGAATGTGACAATGAGATAGTTGAATTGGATGCGGCTGATTTATTAGCCAAGTACACACATTATTGTCAAGTTTGTGGCAAAGGGTTCAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTAATAAGAATAGAGATTATTTGATGAGTATGAAAAATAGGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAACCAAAAGCATGTCAAGTTTCAACCATTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTATGTGTGCAAGAGGTGTAATTTGAAGCAATTTTCTGTTCTTTCGGATTTGAGGACACATGAGAAGCATTGTGGTGATCTTAGGTGGCAGTGTTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGACACCACCCGGTTATCAATGGTTTGTCATATAGTACTCATACAAGCTAG 1200 0.3758 MISRTTPLGFEIGNQGLQMFPMVTEDLMPLPNSMEGISSSTSPSNSLLFNLSTLKDKLNQVQTLVGVILSPNQQDSSTSMALSSMKSTIQEIIVTSTSMMFTCQQIALSFPQGTTSIKCIAQEFQKQQSNIQSNFGNNDTSIDLRGQSFISNNESEPLDWFGESYNSNINYRLKDDIDDQRVDHEISETNNSIRGSNEDISTKNNFDRDDTCLKFGSSYNWVGPECDNEIVELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKNRDYLMSMKNRKYSCPQEGCRWNQKHVKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSTHTS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03335 399 Gene3D Classic Zinc Finger 331 380 - -
Mepo6g03335 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Mepo6g03335 399 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Mepo6g03335 399 SMART c2h2final6 244 266 IPR013087 -
Mepo6g03335 399 SMART c2h2final6 295 328 IPR013087 -
Mepo6g03335 399 SMART c2h2final6 333 355 IPR013087 -
Mepo6g03335 399 SUPERFAMILY beta-beta-alpha zinc fingers 242 268 IPR036236 -
Mepo6g03335 399 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 40 390 IPR044300 GO:0010044|GO:0010447
Mepo6g03335 399 Gene3D Classic Zinc Finger 237 302 - -
Mepo6g03335 399 FunFam Zinc finger protein 574 243 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03335 Mepo-Chr6 45305033 45306232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03335 44 388 C2H2 Transcription Factor Family AT5G22890 47.075 4.55e-110 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g03335 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03335 6 45305033 45306232 Mepo6g03335 6 45305033 45306232 ECH