Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03334 ATGTTGTCTAAAATGGATATGGAAGGAATTATAGGCACTGAGGAACATGTTAATGATGTTGGGCACCTCATCAAAGGAAAGCGAACGAAACGGTTAAGGCAGTTGTCTCCTGTCACCGTAGCAACTGCTACGTTGACATCAAGCTGCTCAAGTGCCACCGGAGGTGGTGGATCGTTTTCATCCACCACCTTTGATGACACTGAGCAAGAAGAGGAAGCAGACATGGCTAATTGTTTGATTCTTCTGGCTCAAGGAAGAACCGGGGGAGAAGAGGAGAATCAAAATCGTAGTCCTCAGAACCACCACCACAACAACAGCCAACAAGTGGATGGTTACAACAAAATTATAACAACTGAAAAGGTGACAAAAAACGGTTTTGATAGTTATGAGTGCAAAACTTGTAACCGTTTTTTCCATTCATTTCAAGCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCAAAGATGAAAGAAGAAAAACAATCCTCACCTCCGCGACCGCGACAAATCACCGCCACCGGTGAATTTGAACATGAAAATAAACAAATTCATCCCAAGAATATTAGTCCTCTTGTTCCTCCAGTTTCTCTTGAATTAAGGTGTGGTGTTAATATCAACTTCAAGACTAACAAGGTTCATGGTTGTTCAATATGTGGAGCTGAATTCACATCAGGTCAAGCATTGGGTGGTCACATGAGGAGACATAGAGCTTGTATCAATAACAACAATAACAACAAAAACAACAACGTTGGTGTTGTTACAGGTTTTGAAGATGTTCATGTCAGGTCTAGGAATGTTCTAGAATTGGACCTTAACCTTCCGGCACCGGAGGAAGATCTCCGCGATTCGACGTTTCAGTTTCCGGCGTTGGTGGGTTGCCATTATTAG 888 0.4268 MLSKMDMEGIIGTEEHVNDVGHLIKGKRTKRLRQLSPVTVATATLTSSCSSATGGGGSFSSTTFDDTEQEEEADMANCLILLAQGRTGGEEENQNRSPQNHHHNNSQQVDGYNKIITTEKVTKNGFDSYECKTCNRFFHSFQALGGHRASHKKPKMKEEKQSSPPRPRQITATGEFEHENKQIHPKNISPLVPPVSLELRCGVNINFKTNKVHGCSICGAEFTSGQALGGHMRRHRACINNNNNNKNNNVGVVTGFEDVHVRSRNVLELDLNLPAPEEDLRDSTFQFPALVGCHY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03334 295 SUPERFAMILY beta-beta-alpha zinc fingers 128 235 IPR036236 -
Mepo6g03334 295 MobiDBLite consensus disorder prediction 88 112 - -
Mepo6g03334 295 MobiDBLite consensus disorder prediction 87 112 - -
Mepo6g03334 295 PANTHER ZINC FINGER PROTEIN ZAT5 65 279 - -
Mepo6g03334 295 SMART c2h2final6 129 151 IPR013087 -
Mepo6g03334 295 SMART c2h2final6 213 235 IPR013087 -
Mepo6g03334 295 Gene3D Classic Zinc Finger 204 258 - -
Mepo6g03334 295 Gene3D Classic Zinc Finger 103 186 - -
Mepo6g03334 295 Pfam C2H2-type zinc finger 129 154 - -
Mepo6g03334 295 Pfam C2H2-type zinc finger 212 237 - -
Mepo6g03334 295 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Mepo6g03334 295 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Mepo6g03334 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 235 IPR013087 -
Mepo6g03334 295 MobiDBLite consensus disorder prediction 145 170 - -
Mepo6g03334 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03334 Mepo-Chr6 45290652 45291718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03334 10 295 C2H2 Transcription Factor Family AT2G28200 41.139 3.35e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g03334 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03334 - - psat:127086554 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03334 6 45290652 45291718 Mepo6g03334 6 45290652 45291718 ECH
Mepo6g03334 6 45290652 45291718 Mepo2g01795 2 26394455 26395635 ECH
Mepo4g02499 4 33371886 33372948 Mepo6g03334 6 45290652 45291718 ECH
Mepo6g03334 6 45290652 45291718 Mepo2g01795 2 26394455 26395635 PCT