Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03247 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACCCTTTGATTGATGAAATTCCTGTTTCTGTCGATGGCTCCTTCGCCTTCACGTGGCCCCCACCTCACCTCTCCAATGGCGGTATTGAAATGGATGATAGCTCTCTAGTGGATTCTGATGGTATCAAAGAACCTGGTTCGAAGAAGAGAGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGCCGAGAAAAGTTGCGGAGGGATAGGCTGAACGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGATAAGGCGGCAATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGGGGTGAAGCCCAAAAGTTGAAAGACTCAAATTCAGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTCCGCGATGAGAAGCAGAGGCTTAAGGCTGAGAAGGAGAAGTTGGAGCAGCAGGTGAAATCAATGAACACCCAACCCGGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCATCAAGGCCAAGCCCCAAGCAACAAATTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 693 0.4834 MVSPENTNWLFDYPLIDEIPVSVDGSFAFTWPPPHLSNGGIEMDDSSLVDSDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPGFLTHPPAIPAAFAHQGQAPSNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03247 230 SMART finulus 75 126 IPR011598 GO:0046983
Mepo6g03247 230 Pfam Helix-loop-helix DNA-binding domain 73 120 IPR011598 GO:0046983
Mepo6g03247 230 MobiDBLite consensus disorder prediction 48 63 - -
Mepo6g03247 230 Gene3D - 72 145 IPR036638 GO:0046983
Mepo6g03247 230 MobiDBLite consensus disorder prediction 40 77 - -
Mepo6g03247 230 Coils Coil 117 172 - -
Mepo6g03247 230 CDD bHLH_AtILR3_like 74 149 - -
Mepo6g03247 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Mepo6g03247 230 PANTHER BHLH TRANSCRIPTION FACTOR 4 230 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Mepo6g03247 230 FunFam Transcription factor bHLH34 60 118 - -
Mepo6g03247 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 145 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03247 Mepo-Chr6 44431567 44433884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03247 1 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.362 2.50e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g03247 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03247 - - ccaj:109815088 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03247 6 44431567 44433884 Mepo6g03247 6 44431567 44433884 ECH
Mepo6g03247 6 44431567 44433884 Mepo2g02879 2 38561239 38564748 PCT