Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03214 ATGAGACAAGCTGGTGCATATTCAGGTATACTAAATGGTGGCATAGGAAGAACAGGTCCACATTCATTACCCTTAGCAAGAATAAAGAAGATAATGAAGAATTCTAGTGAAGACGTGAAGATGATATCAGGTGTAGCTCCAATTGTTTTCTCAAAAGCTTGTGAACTTTTCATTGAAGAACTTACAAGAAGGTCTTGGATTATGGCTATTGATGCTAAAAGAAGAACTTTGAATAAAGAAGATGTTGCTTCTGCTGTTATAGCTACTGATATTTTTGATTTTTTAATCACTTTGGTTTCAAACTCTGATTCCACTGCTGATACCACTGTCATGCAAATGGAAACTATGAATTCCTCTTAG 360 0.3528 MRQAGAYSGILNGGIGRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKEDVASAVIATDIFDFLITLVSNSDSTADTTVMQMETMNSS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03214 119 FunFam Nuclear transcription factor Y subunit C 14 101 - -
Mepo6g03214 119 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Mepo6g03214 119 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 104 - -
Mepo6g03214 119 SUPERFAMILY Histone-fold 15 95 IPR009072 GO:0046982
Mepo6g03214 119 Gene3D Histone, subunit A 15 101 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03214 Mepo-Chr6 43989170 43989529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03214 21 103 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.855 2.51e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mepo6g03214 CBFD_NFYB_HMF 2.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03214 - - gmx:100777614 186.037