Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03190 ATGGAGAGAGATATGCCACCTTGGTTGAAACCCCAAATCGAAGAAGAGTGGTACATGAACAATATACCACTTTGTACCGAAGAACTTATCCCAAATCTTCAAAACCACATTCAACAACAAAACATTGTCGGTTCTTCATACCCAAACACTTCTGTTTTTGAGCACCATTTAGGTTCCTCATTTTCTTTGCCATCACCCAAATCCAATTTATCAAATCTACCAAATATTAATGACAATATCAACATCACTGATACCGTCACCACAAACAATCCATTTGGTAATGTCTTCAATTTAGAATCCCAAGGTGTTTTTCAACCTCCATTGTCAATTGCGCAGTTAACCTCGACATGGTGGAAGGAGATTGAGAATAAGACAAATAAAGATGGAAATGGAGAGGTTGGCAGAGGATCGAATTATGACTCTAATGAGAGTGTTGGTGTTGGGAAGATGGGGAACCATGGGAAAAATGAGGGCAACAATTATAATGCAAATAACAATGTTGGTGGTAGTAATAATAACATCATAGATAATAATGATGATGAAAATTGTGTTGCTGAGGGGAACCAAAAAGGGAAGAAAAAGAAAATGCCATCAAAGAGTCTCATCGCTGAAAAGAAGCGAAGGCAGAAACTCAATGATAATATGCACAAGCTTCGTTCTGTTGTGCCAAAGATTAGCAAGATGGATAAAATTTCAATACTTGGGGATGCTGCTGACTACTTGAAAGAGTTACAAAAACAAATTAATGATCTTGAAAGTGAGATAGAGTCAAGCTCCCCTAGATCATTTATGCCACCGCCTACAGGAACTCACATTAAGACATCCACCATGTCAACCCTTCCGGTTCAAATGAAAGAAGAGTTATGTCCTAACAATGCATTAGGTCTTAAAAACCAACCAACAAAGGTAGATGTTAGGGTAAGTGCAGGAGGACTTGTCAACATCCATATGTTTTGTGCTTGCAAACCAGGTGTTTTGGCGTCGACTATGAAGGCATTGGATAGCCTTGGTTTAGATGTTCATCAGGCTAATATAAGTTGTTTCAATGATTTTTCTTTAGATGTGTTCAAAGCTGAGCAACACAACAAAGACCAAGAATTGACCCCCGAGCAAATTGAAACAGTACTGTTGAAGGCATTGGGTTTTCATTGA 1152 0.3845 MERDMPPWLKPQIEEEWYMNNIPLCTEELIPNLQNHIQQQNIVGSSYPNTSVFEHHLGSSFSLPSPKSNLSNLPNINDNINITDTVTTNNPFGNVFNLESQGVFQPPLSIAQLTSTWWKEIENKTNKDGNGEVGRGSNYDSNESVGVGKMGNHGKNEGNNYNANNNVGGSNNNIIDNNDDENCVAEGNQKGKKKKMPSKSLIAEKKRRQKLNDNMHKLRSVVPKISKMDKISILGDAADYLKELQKQINDLESEIESSSPRSFMPPPTGTHIKTSTMSTLPVQMKEELCPNNALGLKNQPTKVDVRVSAGGLVNIHMFCACKPGVLASTMKALDSLGLDVHQANISCFNDFSLDVFKAEQHNKDQELTPEQIETVLLKALGFH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03190 383 MobiDBLite consensus disorder prediction 155 182 - -
Mepo6g03190 383 SMART finulus 201 250 IPR011598 GO:0046983
Mepo6g03190 383 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 380 - -
Mepo6g03190 383 CDD bHLH_AtAMS_like 198 268 - -
Mepo6g03190 383 MobiDBLite consensus disorder prediction 124 198 - -
Mepo6g03190 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 268 IPR036638 GO:0046983
Mepo6g03190 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Mepo6g03190 383 Coils Coil 234 261 - -
Mepo6g03190 383 CDD ACT_UUR-ACR-like 322 380 - -
Mepo6g03190 383 MobiDBLite consensus disorder prediction 130 145 - -
Mepo6g03190 383 Gene3D - 186 259 IPR036638 GO:0046983
Mepo6g03190 383 Pfam Helix-loop-helix DNA-binding domain 202 245 IPR011598 GO:0046983
Mepo6g03190 383 ProSiteProfiles ACT domain profile. 314 383 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03190 Mepo-Chr6 43635588 43641163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03190 196 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 59.756 2.14e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g03190 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03190 - - mtr:11429864 525.013