Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03164 ATGGGAATTCAAGACAAAGATCCTCTTGCACAATTGAGTTTACCACCTGGTTTTCGATTTTACCCCACCGATGAAGAGCTTCTTGTTCAATATCTATGTCGTAAAGTAGCTGGTCATCATTTTTCTCTTCAAATCATTGCTGAAATTGATCTCTACAAATTTGACCCATGGGTTCTTCCAAGTAAGGCAATTTTTGGTGAGAAAGAATGGTATTTCTTTAGTCCAAGAGATAGGAAGTATCCTAATGGGACAAGGCCAAATAGAGTAGCTGGATCTGGGTATTGGAAAGCCACTGGAACAGACAAGATTATAACAAATGAAGGTAGAAAAGTTGGTATCAAAAAAGCACTTGTTTTCTATGTTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGACTACTCGACTCTTCACGAAACAACGGTGGCACCAGGCTAGATGATTGGGTTCTATGTCGTATCTACAAGAAAAACTCAAGCGCACAAAAACCTATTCCAAATGGCGTCATTTCAAGCAGAGAATACACTCAATATAGCAACGGTTCATCATCTTCTTCATCATCCCACCTCGACGATGTTCTTGAATCACTTCCACAAATTGACGACCGTTGCTTCAAGCTGCCACATGTCAACTCGCTAAGAACGGCGCAGCATCGGCAACAAGAAGAAGAGAAGCTGAATTTTCAAAATCTAAATGCTGCAAATAACAATTTCATGGATTGGTCTAATTCATCATCGATTTTGAACACAGTAACAGAGTTTCAAGAGGGTCAAACTCAAGGAATGATGAATTTTAGTGGTTGTAATGACCTTTATGTCCCTTCCGTCTCCACATTATGTCAAGTGGACTCTTCCGTTATTACGGAGAGAACTAGCAAGATACCCGTGCATCCTACTGAAGACGAGGTTCAGAGTGGGGCGAGAGCAAACCAAGTTGAGAATTCGTCTGAGTTTTTTCAACGCGGTTCAAATGATTTTACTCAAGGAATGGGATACACTAATCCAGTCGACCCGTTTGGGTTTAGGTACCCGGTTCAACCGGTTGGATTTGGATTCCAACAATGA 1080 0.4093 MGIQDKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTRLDDWVLCRIYKKNSSAQKPIPNGVISSREYTQYSNGSSSSSSSHLDDVLESLPQIDDRCFKLPHVNSLRTAQHRQQEEEKLNFQNLNAANNNFMDWSNSSSILNTVTEFQEGQTQGMMNFSGCNDLYVPSVSTLCQVDSSVITERTSKIPVHPTEDEVQSGARANQVENSSEFFQRGSNDFTQGMGYTNPVDPFGFRYPVQPVGFGFQQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03164 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 234 - -
Mepo6g03164 359 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Mepo6g03164 359 FunFam NAC domain-containing protein 72-like 23 167 - -
Mepo6g03164 359 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Mepo6g03164 359 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Mepo6g03164 359 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03164 Mepo-Chr6 43335534 43337834 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03164 1 346 NAC Transcription Factor Family AT1G52890 56.695 5.39e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo6g03164 NAM 7.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03164 - - tpra:123895211 630.943