Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03113 ATGGGTCGTAAAAAAATAGCTATTGAATTTGTTGAGAACAGGGATGCAAGGTATGTCACATTTTCTAAGAGAAAGAATGGTCTTTTTAAGAAAGCAGATGAGTTATCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCAGCTGGTAACCCATTTTCTTTTGGTTCTCCATCTTTTCAAGTTGTGGTCGATGAGTACCTTCGTGAAACACAAGGTGAATCATCTAGGCAAAATGCCGAGCCTTCAGAAAATGGAAACATCAACGTGCTCGACAAAGAACTTATGGGCGTGACGAAAGAGCTGAAGAAGGTGGAGACAATTGACAAAGGTAAAGGACTTATTGCCTATGATGATCTTGATTTAGATGGACTTAAAAAAGTGAAGGCTTCGTTGGAAGAGCTACATGCGGATATTGATGCAGCATCAGCTTTACTTCTCCTTGCAAAGAAACCTATGTGA 468 0.3932 MGRKKIAIEFVENRDARYVTFSKRKNGLFKKADELSILCNARVGIVGFTPAGNPFSFGSPSFQVVVDEYLRETQGESSRQNAEPSENGNINVLDKELMGVTKELKKVETIDKGKGLIAYDDLDLDGLKKVKASLEELHADIDAASALLLLAKKPM 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03113 155 PANTHER MADS BOX PROTEIN 3 141 - -
Mepo6g03113 155 Coils Coil 127 147 - -
Mepo6g03113 155 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Mepo6g03113 155 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Mepo6g03113 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo6g03113 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo6g03113 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo6g03113 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mepo6g03113 155 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Mepo6g03113 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo6g03113 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03113 Mepo-Chr6 42843612 42844135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03113 1 153 Type I MADS-box Gene Family AT2G34440 35.429 1.01e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo6g03113 SRF-TF 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03113 - - mtr:25493407 177.948