Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03110 ATGGCGACTTATGCTGCTATAAAGCCAACAAAGGTAGGTTTGGAGGATTCTCAGGAGCAGATCCACAAGATTAGGATCACTCTCTCCTCCAAGCACGTCCAAAATCTCGAGAAGGTTTGTGCTGACTTAGTTCGTGGTGCAAAGGACAAGCATCTTAGGGTCAAGGGACCTGTCAGGATGCCTACTAAGGTTCTTCACATTACTACTAGGAAGACCCCTTGTGGTGAAGGTACCAACACTTGGGATAGATTTGAACTCCGTGTGCACAAGAGGGTCATTGACCTTTACAGTTCTCCAGACGTCGTTAAGCAGATTACCTCTATCACCATCGAACCTGGTGTCGAGGTTGAGGTGACCATTGCAGACGCTTGA 372 0.4758 MATYAAIKPTKVGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03110 123 Gene3D Ribosomal protein S10 domain 8 122 IPR036838 -
Mepo6g03110 123 PRINTS Ribosomal protein S10 family signature 58 73 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo6g03110 123 PRINTS Ribosomal protein S10 family signature 80 94 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo6g03110 123 PRINTS Ribosomal protein S10 family signature 23 36 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo6g03110 123 SMART Ribosomal_S10_2 25 119 IPR027486 -
Mepo6g03110 123 FunFam 40S ribosomal protein S20 8 122 - -
Mepo6g03110 123 NCBIfam 30S ribosomal protein S10 22 120 IPR005729 GO:0003735|GO:0006412|GO:0015935
Mepo6g03110 123 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 16 122 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mepo6g03110 123 Pfam Ribosomal protein S10p/S20e 25 119 IPR027486 -
Mepo6g03110 123 SUPERFAMILY Ribosomal protein S10 23 120 IPR036838 -
Mepo6g03110 123 Hamap 30S ribosomal protein S10 [rpsJ]. 21 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03110 Mepo-Chr6 42832850 42836041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03110 4 123 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 87.500 9.33e-75 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03110 K02969 - gmx:100817306 236.498