Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03106 ATGGAGGAGAATTCTGAGAGTTCTAGGGCTTTGAATAGTTCTGGAGTCTCAGATAGGAACCAAAGGGAAAACCCTTTCTCCGGCGAGGGATCACAAGATTCTAGGTTTAGAAGAGAAAGGGATTGGATTCATGGTGCACAAGGTGATCAAAACAAAAACCTAGGTGGGTTTTGTGAGGGTGAAGAAGTAGAGAATGATCCTTTCTTTTGTTCAGTTGAATGGGGTGATATTAGTTTGAGGCAATGGTTGGATAAACCGGATCGATCGGTGGATTTCTTTGAATGCTTGCACATATTTAGACAAATAGTTGAGATTGTTAATGCAGCACACTGTCAAGGTGTTGTTGTTCATAATGTGAGGCCTTCCTGCTTTGTCATGTCGTCTTTCAACCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACCAGTTCAGATTCTTTAGGAGATGGAGTGAACAGCGACCAAGGTGTCGAGGTTAAAACTCCGACATCTCACTGTCCTCGCGATATTTTGCATCAGCAGAGTTTCGGAAGTGAAGATTTTTTGCCTGCCAAGATTTCAACGGATGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGTGCAGTGTACGCAGCTCGTGCGTCATTAATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTGGAAGGTAAGAAGCAATCGTTTCCGATGAAACAGATACTTCTAATGGAGATGAGTTGGTACACTAGTCCTGAAGAGGTTGCTGGTACTCCTAGTTCATGTGCTTCGGATGTTTACCGATTGGGGATTCTCCTTTTCGAGCTATTCTGTCCACTGAGCTCAAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACATCCTGACCCTAGCAGTCGTCCAACACTAGGGGAGTTGTTGCAGAGCGAGTTCCTCAACGAACAAAGAGATGATATGGAAGAGCGTGAAGCAGCAATAGAGCTTAGACAGAAGATAGAAGATGAGGAGTTGTTGCTAGAATTCCTTTCATTACTTAAACAAAGAAAACAAGAAGTTGCTGAAAAGTTGCAACATACTATCTCTTTTCTATGTTCAGATATTGAAGAAGTGACCAAGAAGCAAACTAGATTTAAAGAGATTGCTGGCATTGAACTAGGGAGTGACGACCGTTCAGCATCAACTTTTCCATCCATGACAGTCATTGATAGCGAGGATTCTGCTTGTTTAGGAACTAGAAAACGAGTCAGACTAGGGATGCATCTCGATGAATGTGATGATAACATGGAGAGTGATCAGAAAAATCATGGAAGTTTTCTTTCAAAAAATTCGCGACTAATGAAAAACTTTAAGAAGCTTGAGTCAGCGTACTTTTTAACACGATGCAAACCATCCTATTCCTCAGGAAGACCGGGGGTTAGACATTCACATATGGCAAATGGTGGGAGAGGGTCTGTCGTCATGAGTGAAAGAAGTTGCATCAATAACTTGGCGTTGAAAGACCAAGGAAGGGACAGCGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTACTTATCTTTTAGTAAGCTTAAAGTTAAGGCTGACCTGAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCACTCAGTTTCGACCGTGATGGAGAATTTTTCGCAACCGCTGGTGTGAATAAGAAAATCAAAATATTTGAATGTGATACAATCATAAAAGAGGATCGTGATATCCACTATCCGGTAGTGGAGATGGCTTGCAGGTCAAAGCTGAGCAGTTTATGTTGGAATACATACATTAAAAGTCAAATTGCTTCAAGTAATTTTGAAGGTGTTGTACAGTTATGGGATGTTACAAGAAGTCAAATACTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCGATTGATTTCTCATCAGCAGATCCAACAATGTTGGCGAGTGGCAGCGATGACGGTTCAGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTATTGGTACCATCAAAACGAAGGCAAATGTATGCTGTGTTCAGTTTCCTCTGGATTCCGCTAGATACCTCGCATTTGGTTCGGCAGATCACCGGATATATTACTATGATCTACGCAACTTAAGAGTGCCGCTTTGCACTTTAGTTGGACATAATAAGACTGTGAGCTACATCAAGTTTGTAGACAATGTCAACCTTGTCTCTGCATCCACGGACAACACTTTGAAGCTTTGGGATTTGTCTACATGTACATCTCGAGTTATTGACTCGCCGATTCAATCGTTCACTGGTCACACAAATGTTAAGAACTTTGTGGGATTATCAGTATCTGATGGTTATATTGCTACTGGTTCAGAGACAAATGAGGTGTTTGTATACCACAAGGCCTTCCCTATGCCAGCATTACAATTCAAGTTTCAGAACACAGATCCAATTTCTGGTAACGAAGTGGACGATGCTGCACAGTTTGTCTCCTCGGTTTGCTGGCGTGGTCAATCACCAACCCTAATCGCCGCAAATTCCACAGGGAATGTCAAGATTCTCGAGATGGTTTGA 2625 0.4187 MEENSESSRALNSSGVSDRNQRENPFSGEGSQDSRFRRERDWIHGAQGDQNKNLGGFCEGEEVENDPFFCSVEWGDISLRQWLDKPDRSVDFFECLHIFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTSSDSLGDGVNSDQGVEVKTPTSHCPRDILHQQSFGSEDFLPAKISTDARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVAGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQKIEDEELLLEFLSLLKQRKQEVAEKLQHTISFLCSDIEEVTKKQTRFKEIAGIELGSDDRSASTFPSMTVIDSEDSACLGTRKRVRLGMHLDECDDNMESDQKNHGSFLSKNSRLMKNFKKLESAYFLTRCKPSYSSGRPGVRHSHMANGGRGSVVMSERSCINNLALKDQGRDSASAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIIKEDRDIHYPVVEMACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQILSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLDSARYLAFGSADHRIYYYDLRNLRVPLCTLVGHNKTVSYIKFVDNVNLVSASTDNTLKLWDLSTCTSRVIDSPIQSFTGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALQFKFQNTDPISGNEVDDAAQFVSSVCWRGQSPTLIAANSTGNVKILEMV 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03106 874 SMART WD40_4 833 872 IPR001680 GO:0005515
Mepo6g03106 874 SMART WD40_4 778 817 IPR001680 GO:0005515
Mepo6g03106 874 SMART WD40_4 688 727 IPR001680 GO:0005515
Mepo6g03106 874 SMART WD40_4 557 592 IPR001680 GO:0005515
Mepo6g03106 874 SMART WD40_4 731 769 IPR001680 GO:0005515
Mepo6g03106 874 SMART WD40_4 606 642 IPR001680 GO:0005515
Mepo6g03106 874 SMART WD40_4 645 685 IPR001680 GO:0005515
Mepo6g03106 874 CDD WD40 567 870 - -
Mepo6g03106 874 Gene3D - 538 874 IPR015943 GO:0005515
Mepo6g03106 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 689 - -
Mepo6g03106 874 ProSitePatterns Trp-Asp (WD) repeats signature. 756 770 IPR019775 -
Mepo6g03106 874 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 535 874 - -
Mepo6g03106 874 PRINTS G protein beta WD-40 repeat signature 756 770 IPR020472 -
Mepo6g03106 874 PRINTS G protein beta WD-40 repeat signature 672 686 IPR020472 -
Mepo6g03106 874 PRINTS G protein beta WD-40 repeat signature 629 643 IPR020472 -
Mepo6g03106 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 738 772 IPR001680 GO:0005515
Mepo6g03106 874 SUPERFAMILY Protein kinase-like (PK-like) 35 337 IPR011009 -
Mepo6g03106 874 MobiDBLite consensus disorder prediction 7 31 - -
Mepo6g03106 874 Gene3D Transferase(Phosphotransferase) domain 1 76 347 - -
Mepo6g03106 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 738 772 - -
Mepo6g03106 874 PANTHER PROTEIN SPA1-RELATED 2 13 874 IPR044630 GO:0009640
Mepo6g03106 874 Coils Coil 332 352 - -
Mepo6g03106 874 ProSiteProfiles Protein kinase domain profile. 1 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo6g03106 874 MobiDBLite consensus disorder prediction 1 38 - -
Mepo6g03106 874 SMART serkin_6 16 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo6g03106 874 Pfam WD domain, G-beta repeat 648 685 IPR001680 GO:0005515
Mepo6g03106 874 Pfam WD domain, G-beta repeat 734 769 IPR001680 GO:0005515
Mepo6g03106 874 Pfam WD domain, G-beta repeat 562 591 IPR001680 GO:0005515
Mepo6g03106 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 694 IPR001680 GO:0005515
Mepo6g03106 874 SUPERFAMILY WD40 repeat-like 562 871 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03106 Mepo-Chr6 42752189 42757601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03106 642 816 Miscellaneous Gene Families AT5G08390 25.989 8.50e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Mepo6g03106 WD40 9.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03106 K26557 - gmx:100811457 1486.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03106 6 42752189 42757601 Mepo6g03106 6 42752189 42757601 ECH