Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03062 ATGGCTCCAAGAGATAACAGAATCACCACCACCACTACCGGGCCTGGGCCCAACCCTTCAGCCCAGGCTGAAGCCCAAAAAGAGATTCGTTACAGAGGTGTAAGAAAACGTCCATGGGGTCGTTACGCCGCTGAGATCCGTGACCCAGGTAAAAAAACACGTGTCTGGCTTGGAACATTTGACACCGCTGAAGAAGCGGCGCGTGCTTACGACAAAGCGGCACGTGAGTTTCGCGGCTCGAAAGCCAAGACAAATTTTCCAACGCCGTTGGAGATTATCAACAACCGTAGCCCTAGTCAAAGCAGCACTCTTGAATCACCATCACCACCGCCGCTTGATTTAACTTTAACACCATTCTCCGCCGTATCCTCCTCCGGTACCGGTGGTGTTACCTTGGCTTACCCGGTGGCGCGTCCTGTTATGTTTTTTGACGCATTCTCACGTGCTGAAACTGCCCTAACCGTTGGCCGTCGTGAGATGTGTGGATTTGAACGTCCTATGGCTGATTTTCGACGCGCCGCCGTGCAGAGTGACTCTGGTTCTGGTTCATCTTCTTCCGTTGTTGATTATGAAGGTGTGCCACGTCAGAGACTCTTGGATCTTGATCTTAATGTTCCTCCACCACCTGAAGTTGCTTGA 639 0.518 MAPRDNRITTTTTGPGPNPSAQAEAQKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGSKAKTNFPTPLEIINNRSPSQSSTLESPSPPPLDLTLTPFSAVSSSGTGGVTLAYPVARPVMFFDAFSRAETALTVGRREMCGFERPMADFRRAAVQSDSGSGSSSSVVDYEGVPRQRLLDLDLNVPPPPEVA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03062 212 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Mepo6g03062 212 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g03062 212 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Mepo6g03062 212 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Mepo6g03062 212 MobiDBLite consensus disorder prediction 1 32 - -
Mepo6g03062 212 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Mepo6g03062 212 FunFam Ethylene-responsive transcription factor 2 30 88 - -
Mepo6g03062 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 188 - -
Mepo6g03062 212 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Mepo6g03062 212 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Mepo6g03062 212 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Mepo6g03062 212 MobiDBLite consensus disorder prediction 87 110 - -
Mepo6g03062 212 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Mepo6g03062 212 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03062 Mepo-Chr6 42256606 42258196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03062 14 144 AP2-EREBP Transcription Factor Family AT3G15210 55.769 9.45e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo6g03062 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03062 K09286 - gmx:100500601 224.172