Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03051 ATGGATCAGATGACAGATTCGGATAGGGATCAACAACGGCAAGGCTATTTTCATTCTGAACCGTGTGTTGTTTTGAGAGGCCCCAGCGTTGGACATCCTAATATCCGCTCAGTGGTGACTGCTTCAGGGAACACATCTAATGTTGATTCTCACTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGATTACACAATTCAACGGCATTCCACCTCAACATAATCTTGAGATGGGCGTTGCAACTGCAGGCAACATATATTATTCTGGCATGAATCCTTCTTCAAGTACTGGTGTTTTCCCTTTGCCTCATAGAGCCTCTGATCAGTTGCCAGGTTCAAGCACATTTGCAATTTCCGGAGTTTCCTTAGATAATTTTGGAAGAAGCAATGGTTTCATGGATGATGCTAGAGGCCCGTACAAAAGGAAAGTTGCTGAAGGGATTAGAGGAAACCACCAAAATTTTAATGCTTCAACTAGTTCTTCTATTGCTCCACCAAATGCAAGACACGCTGATGGGGTTGCTATGATGGATACTGCGCCATTGCCATTCCGTGTCCCTTCGCTTGTTGGAGTAGGACCACATGGTGGTGCGTGGAGTAGGTCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATTCACGGAAATTATTTGGGACAGCACTATCCACCAGCGGCTCCTCCGTGGTTGGATCAGCAAGTGAATAGCAATAGCAGTGATGGCCATACTACAGCCTGGAATCCGTCTGTTCCAATGCCTTATATTCAAGCACCAAATATGAATGGAAGTTCATTAGAGAGTGCAAATATGGGTTTGCAGAGGTATCACGACACAGCTGGTAACCGAAATGTCCTGAGGTTTCCTCCTCCGCCTCCTCCTGTCAATCAACAGCATCCTAGTTATCATCATCCAACACTCCCTATGCAAGGAATAAGAGGCCACAATATCAGCTTTCACCCTCCGGTAACTGCAGCTTCATTTAGAGTTCCACCAAACCCTCCACGTGGTTCTGTGATCCCTCCACAGACTGGTTTTGAGGCAGGTCCTAGGCATATTGTCCCTGCACCATCAACAGGCTTCCGGATTTACCGACCTCATAGGCTCATGCCAGAGACAGCTTTCGGACATCGAAGTCTACCTCCTGTGGGCTTCTTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTTGGAAATCTGATTGACCATCACCGAGATATGCGCTTGGACATAGAGGACATGTCTTACGAGGATCTTCTTGCATTGGGTGAGAGGATAGGCAGTGTAAACACTGGTTTATCTGAGGAGACAATTGAAACTCAACTGAAGTCTAAAGTTTATTCAACGAAAGACACTGGTATTAATCTTGAGGAGGCAGCTTCTGACGATCAGGAAACTGATTCTTGCATAATATGTCAGGAGGAATTTAAGAACAAAGAGAAGATTGGGATTCTTCGGTGTGAGCATGAATATCACGCCGAATGCTTAACTAAATGGTTGCTTGTCAAGAATGTCTGTCCGATATGCAAATCAGAAGCGTTGGCTCCTGGAAGCAAAGATGCATAG 1572 0.4497 MDQMTDSDRDQQRQGYFHSEPCVVLRGPSVGHPNIRSVVTASGNTSNVDSHYLPDAYDNARVYGITQFNGIPPQHNLEMGVATAGNIYYSGMNPSSSTGVFPLPHRASDQLPGSSTFAISGVSLDNFGRSNGFMDDARGPYKRKVAEGIRGNHQNFNASTSSSIAPPNARHADGVAMMDTAPLPFRVPSLVGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHYPPAAPPWLDQQVNSNSSDGHTTAWNPSVPMPYIQAPNMNGSSLESANMGLQRYHDTAGNRNVLRFPPPPPPVNQQHPSYHHPTLPMQGIRGHNISFHPPVTAASFRVPPNPPRGSVIPPQTGFEAGPRHIVPAPSTGFRIYRPHRLMPETAFGHRSLPPVGFFQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIETQLKSKVYSTKDTGINLEEAASDDQETDSCIICQEEFKNKEKIGILRCEHEYHAECLTKWLLVKNVCPICKSEALAPGSKDA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03051 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 516 IPR013083 -
Mepo6g03051 523 SUPERFAMILY RING/U-box 465 515 - -
Mepo6g03051 523 Pfam Ring finger domain 469 512 IPR001841 -
Mepo6g03051 523 SMART ring_2 471 511 IPR001841 -
Mepo6g03051 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Mepo6g03051 523 FunFam E3 ubiquitin ligase BIG BROTHER 431 516 - -
Mepo6g03051 523 CDD RING-H2_RNF24-like 469 515 - -
Mepo6g03051 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 137 516 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03051 Mepo-Chr6 42122163 42126180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03051 388 516 C3H Transcription Factor Family AT2G15530 45.385 7.90e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03051 K19041 - gmx:100800642 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03051 6 42122163 42126180 Mepo6g03051 6 42122163 42126180 ECH