Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03044 ATGGCGAAGACAAGACCAGGAAAAAAGGACATGGATTCATACACAATCAGAGGAACAAACAAGGTTGTTAAAGCTGGTGATTGTGTTTTGATGCGTCCTTCTGACACGAGTAAGCCACCCTATGTGGCACGTGTGGAGAAGATCGAGCAAGATAATAGGAACAATGTGAGGGTTCGTGTGAGATGGTATTATAGACCTGAAGAATCTATTGGTGGAAGAAGACAGTTTCATGGAGCTAAGGAACTGTTTTTATCTGACCATTTTGATGTTCAAAGTGCTCACACTATTGAAGGGAAATGCATTGTTCACTCTTTCAAGAACTACACTAAGCTTGAGAATGTAGGTTCTGAGGATTACTATTGTAGGTTTGAGTATAAAGCTGCTACTGGTGCTTTCACTCCTGACCGTGTTGCTGTATACTGCAAATGCGAGATGCCTTATAACCCGGATGACCTAATGGTGCAGTGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGACCATTTTGTTTGTTCTGAATGTTCATCTGACGATGATTTGAAGAAACCACAGGCGGCGTTTCCTGTATCACCAGGATCTGATGGCAAGGTGGAGCCGAAGCGGCGAAAGAGAGGACCATGA 657 0.4368 MAKTRPGKKDMDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGSEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDLKKPQAAFPVSPGSDGKVEPKRRKRGP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03044 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Mepo6g03044 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Mepo6g03044 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Mepo6g03044 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 198 IPR013083 -
Mepo6g03044 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Mepo6g03044 218 Gene3D - 2 132 IPR043151 -
Mepo6g03044 218 FunFam Chromatin remodeling protein EBS 1 132 - -
Mepo6g03044 218 SMART PHD_3 140 187 IPR001965 -
Mepo6g03044 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Mepo6g03044 218 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Mepo6g03044 218 PANTHER OS08G0421900 PROTEIN 1 208 - -
Mepo6g03044 218 Pfam PHD-finger 140 188 IPR019787 -
Mepo6g03044 218 MobiDBLite consensus disorder prediction 187 218 - -
Mepo6g03044 218 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03044 Mepo-Chr6 42014075 42017691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03044 31 132 Core DNA Replication Machinery Family AT4G14700 30.097 4.88e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo6g03044 BAH 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03044 K25868 - gmx:100800993 437.573