Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03034 ATGGCAGATATGTGCAGGCCCGATGCCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCACAAGGTCATTTGGAACATGCATGTCGTTCCCCTAACGGTGTCACAATCTCCCAGTTTCTTTATGATCATTACCGTCCATCCTTTCCATGCATCATTTCAGCCGTTAATCTCTTTGTTGATGCTCTCACTGACGAGGTTTTCGCCAAACTGCTCCTCACTCCGGTAACTGCTCAAGAACCTCCTCCTCCTCCTGTTGTTCCTGGCCAAGAAGACGACGATGGAAACAATCTTGTTTCCTATGTCAAAACTCTCACAATAACTGATACTAAATCTGTATTCAATATACCTCATGAATGCGCTGACTTGATCTTTCCAAAGCTTGACTTGGAGAAGTCTCAAAACATCACTGTCACCGACCTTAAAAGCCAAGAATGGGAGTGCACCTACGTGAAACTCAGTAGACTACGTACTGGCTGGTCTCACTTTGTGAAAGAGAAGAAACTCGTCGCCAAAGATTCTGTTGTTTTCATGAAAAACTCTGCCGGAAAGATATTAGTTGGAATTCGCAGGAACACTAACTTCCCTGCAGCTGAAGCGGGTGAAAGAGGCAGGAATTTAACTGCAAGTGCGGTTTTGAATGCAGTAGAATTGGCGGACAAGAACAAGGAGTTTGAAGTTGTGTATTATCCAACAGCTAGGAATTGGTGTGATTTTGTGATGGATGCTAAGGTTGTAGATGATGCCATGAAGATTGGTTGGGAATCTGGAATGAGAGTCAAACTTACTTTGAAGAAAGATGAATCTTCAAATTCAAAGACATATTATCAGCCTAAGGGGACAATCTCTACTGTCTTTAATTATTCTTCTAATGTCCCTAATTGA 888 0.4212 MADMCRPDAKIPKIHSKVYYFPQGHLEHACRSPNGVTISQFLYDHYRPSFPCIISAVNLFVDALTDEVFAKLLLTPVTAQEPPPPPVVPGQEDDDGNNLVSYVKTLTITDTKSVFNIPHECADLIFPKLDLEKSQNITVTDLKSQEWECTYVKLSRLRTGWSHFVKEKKLVAKDSVVFMKNSAGKILVGIRRNTNFPAAEAGERGRNLTASAVLNAVELADKNKEFEVVYYPTARNWCDFVMDAKVVDDAMKIGWESGMRVKLTLKKDESSNSKTYYQPKGTISTVFNYSSNVPN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03034 295 CDD B3_DNA 101 192 IPR003340 GO:0003677
Mepo6g03034 295 Pfam Auxin response factor 216 289 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo6g03034 295 Pfam B3 DNA binding domain 115 193 IPR003340 GO:0003677
Mepo6g03034 295 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 287 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo6g03034 295 SMART B3_2 102 194 IPR003340 GO:0003677
Mepo6g03034 295 SUPERFAMILY DNA-binding pseudobarrel domain 99 193 IPR015300 -
Mepo6g03034 295 ProSiteProfiles B3 DNA-binding domain profile. 100 194 IPR003340 GO:0003677
Mepo6g03034 295 Gene3D - 100 194 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03034 Mepo-Chr6 41946228 41947115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03034 10 287 B3 DNA Binding Superfamily AT1G77850 34.985 5.31e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo6g03034 Auxin_resp 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03034 - - mtr:11435441 386.726