Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03017 ATGTCACATTCACCAGAAAAACCCGAACCAGAAAAGCCTGAACCGGAGTTAGACCAATTTTCCGATCGGTTTCGTCAAACTGTCACTTTAGAAGCTAACAAACCGGATTTCCGTGAACTCGATCTGGGTTCACCTGTTTCACCATTGAGGACACGTGGCGGACCGTCGGTCAGTAGTAGTTCAGGTTCATCTGGATCTTTCTCCGGTGGTGGTGGTGGTAGAATCGGGTCTAACCCAGTTTCCAAAAGATCCGATTCAGCTCCGAATAAAGATAATAGTAACTCTGGTGAACTTTCCGGTTCGAGTGAAAACTCTCCTACTGCTGATAGATCTACCGGGAATGTGAGAGGTACGAAACCGGGTCATACTAGATCCAATTCAGGATCCGGGTTGTTACATTCGGGTCAAACGGTGAACTCTCCGCCGTTGAATGTTCTTCCTACCGGAAACATTTGTCCTTCCGGGAGGATCTTGAAAACTGGCATGGCGGCGAATCGGAGTTCGAGAAGTGATGTTCTTGGTTCTGGAACTGGGAACTATGGTCATGGCAGTATAATGCGTGGTGGTGGTGTTGGAGTTGTTACAGGTAAGGTGGAGAGTAACAGTATGAGAAGTGGCATTGGGGGTGATTTAGGAAAAAGGGGGGTGCAGAGTGTGGATCCAGAAGAGTTAAAGAAAGCTGGGAATGAGCATTACAAAAAGGGTCATTTTTCAGATGCATTGAGTCTTTATGACCGTGCAATTTCGATGTCGCCGGGGAGTGCTTCTTACCGGAGCAACCGCGCCGCGGCGCTGACCGGTTTAGGAAGACTAGCTGAGGCTGTTAAGGAATGTGAAGAGGCTGTTAGGTTGGATCCTAATTATTCTAGAGCTCATCATCGTTTAGCTTCTCTTTTCATCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTTTGTCATCCGGGATTAACACCTGATCCGACCGAGATGCAGAAGTTGAAAATGGTGGAAAAGCATATTAATAAATGTGCAGATGTTAGGAGAGTAGGGGATTGGAAAAGTGTTCTAAGGGAACTTGGTGCTTCTGTTGCTGCTGGAGCTGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTCTTGAAACTACATCAAATTGATGATGCAGAATCAGTTTTGTTACATGTTCCGAAATCGGAGCCACGAGCTAATAGTAATAGTACATCTTCTCAAGCAAGATTTTTTGGGATGCTCTTGGAAGCTTATTCCTACTTTGTCAAAGCTCAAATTGAGATGGCATTGGGAAGGTTTCAGAATGCAGTCACAGCTGCTGAGAAGGCGAGTCAGATTGACTCCCGAAATCTTGAAGTTGCTGTCTTGCTTAACAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAATGATCTTTTTAAATCTGAACGGTTCACTGAAGCTTGTTCGGCATATGGGGAAGGTTTGAGATTAGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAAATCAATTGAAGACTCTAATCAAGCTTTACGTATCCAGCCAAATTATACAAAAGCTCTTCTTCGAAGGGCTACATCAAACAGCAAGCTGGAGAGGTGGGAAGAAGCAGTAAAAGATTACGAGGTCTTACGAAAAGAACTTCCAAATGATAATGAAGTTGCTGAAGCTCTTTTTCATGCACAAGTTGCGCTAAAGAAATCTCGTGGAGAAGAAGTATATAATTTAAAATTTGGTGGTGAAGTGGAACAAGTATCGGGTCTTGAGCAGTTTAGATCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAGTTGCTTCTAACTCACAATGTAAGCAAATATCACCATTTTTGGATACACTATGTGGTCGGTATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGAAAACCCGACAGTTGCAACTGCTGAGAATGTTAGAGTCGTACCAACTTTCAAGATATACAAAAACGGAAGCAGAGTGAAGGAAATCATATGCCCTAGTCGTGACATGTTGGAACACTCAGTGAGGCATTACAGCATTTAG 2091 0.4376 MSHSPEKPEPEKPEPELDQFSDRFRQTVTLEANKPDFRELDLGSPVSPLRTRGGPSVSSSSGSSGSFSGGGGGRIGSNPVSKRSDSAPNKDNSNSGELSGSSENSPTADRSTGNVRGTKPGHTRSNSGSGLLHSGQTVNSPPLNVLPTGNICPSGRILKTGMAANRSSRSDVLGSGTGNYGHGSIMRGGGVGVVTGKVESNSMRSGIGGDLGKRGVQSVDPEELKKAGNEHYKKGHFSDALSLYDRAISMSPGSASYRSNRAAALTGLGRLAEAVKECEEAVRLDPNYSRAHHRLASLFIRLGQVENARKHLCHPGLTPDPTEMQKLKMVEKHINKCADVRRVGDWKSVLRELGASVAAGADSSPQLFMCRAEALLKLHQIDDAESVLLHVPKSEPRANSNSTSSQARFFGMLLEAYSYFVKAQIEMALGRFQNAVTAAEKASQIDSRNLEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEKSIEDSNQALRIQPNYTKALLRRATSNSKLERWEEAVKDYEVLRKELPNDNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEQVSGLEQFRSAISLPGVSVVHFEVASNSQCKQISPFLDTLCGRYPSINFLKVDIQENPTVATAENVRVVPTFKIYKNGSRVKEIICPSRDMLEHSVRHYSI 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03017 696 CDD TRX_family 601 688 - -
Mepo6g03017 696 Gene3D Tetratricopeptide repeat domain 219 582 IPR011990 GO:0005515
Mepo6g03017 696 ProSiteProfiles TPR repeat profile. 496 529 IPR019734 GO:0005515
Mepo6g03017 696 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Mepo6g03017 696 FunFam TPR repeat-containing thioredoxin TTL4 588 695 - -
Mepo6g03017 696 SMART tpr_5 255 288 IPR019734 GO:0005515
Mepo6g03017 696 SMART tpr_5 416 449 IPR019734 GO:0005515
Mepo6g03017 696 SMART tpr_5 530 563 IPR019734 GO:0005515
Mepo6g03017 696 SMART tpr_5 496 529 IPR019734 GO:0005515
Mepo6g03017 696 SMART tpr_5 462 495 IPR019734 GO:0005515
Mepo6g03017 696 SMART tpr_5 221 254 IPR019734 GO:0005515
Mepo6g03017 696 MobiDBLite consensus disorder prediction 79 146 - -
Mepo6g03017 696 MobiDBLite consensus disorder prediction 51 71 - -
Mepo6g03017 696 SUPERFAMILY Thioredoxin-like 499 694 IPR036249 -
Mepo6g03017 696 Pfam Tetratricopeptide repeat 417 447 IPR019734 GO:0005515
Mepo6g03017 696 Pfam Thioredoxin 601 684 IPR013766 -
Mepo6g03017 696 Pfam Tetratricopeptide repeat 227 288 - -
Mepo6g03017 696 Gene3D Glutaredoxin 589 695 - -
Mepo6g03017 696 MobiDBLite consensus disorder prediction 1 21 - -
Mepo6g03017 696 Pfam Tetratricopeptide repeat 532 562 IPR019734 GO:0005515
Mepo6g03017 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 25 693 IPR044534 -
Mepo6g03017 696 MobiDBLite consensus disorder prediction 1 146 - -
Mepo6g03017 696 SUPERFAMILY TPR-like 221 451 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03017 Mepo-Chr6 41681321 41685221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03017 461 606 U-box Gene Family AT3G07370 29.508 4.14e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03017 - - gmx:100795358 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03017 6 41681321 41685221 Mepo6g03017 6 41681321 41685221 ECH