Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02969 ATGAAGCTCTTTCGATCTCTTAAATTCTTCAGATACTTCAACAATGTTCAGGCTCTCAATGCTACCGGCGATGACACCACCGATAGTGCATCCGAGGACAGAACTGATTGGTCTACCATGCTTCCAGAACTTCTTGCGGATATCATTAAACGAGTTGATGTCATCGGAGAACAATGGCCGCATCGTCGAAATGTCGTCGCTTGTGCCTGCGTTTGCAAACGGTGGAGAGATATCACACGTGAGGTCGTAGGGTCACCTTCACTTAACGGCAAAATGACTTTCCCTTCTTGTCTTAAACAGCCAGGGCCACGCGACCTTCCTCATCACTGTGTTGTAAATTGGAACAAGAAGACATCCACATTTTACCTCTATCTTGCCCTTACTCCATCATTAACAGATAAAGGGAAGTTCCTATTAGCAGCTAGAAGATATCGGTTTGTTACGCATACTGAGTATGTTATATCGCTCGATGCTGATAACTTTTCACAAGGAAGTAATGCTTATGTTGGCAAGCTAAGTTCAGATTTTCTTGAAGCAAGCTTCACAATTTATGACGCCCCGGCTGGTGCCAAACCATCAAGTGACAGAGCAAGCCGGCGTTTTGCAAGCAAACAGATAAGCCCTCAAGTTCCTGCTGGTAACGTCGAGGCAGGGAACATCTCCTACAAAAAATTCAGCCTTTTGAAACCAAAACGTCCAAGGCTAATGATTTGCTCTTTGAAGTCTCCCGCCTCATCAATATGCGAAAGTTCAGGTAGCAAGTCTTTCAATCGCCATACGATGCACTGTAAAGAACATGCTACAAGTTCTGGATACACAATCTTGAAGAACAAAGCTCCAATGTGGAACGAGCAATTGGAGTGCTGGTTTTTGAACTTCCATGAGAAAAAGGATATGACAGTAGCATCAGTGAAGAACTTTCAGCTGGTTGCCACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAAGAAACAGTTCTCCTCCAGTTTTGTAAAGTAGGGGGTGATACTTTCACCATGTACTATAGACAGCCCTTATCCGCCTTCCATGCGTTCGCCATTTGCTTAACTAGCTTCGGCACTAAATTGGCTTGTCAGTAA 1104 0.4457 MKLFRSLKFFRYFNNVQALNATGDDTTDSASEDRTDWSTMLPELLADIIKRVDVIGEQWPHRRNVVACACVCKRWRDITREVVGSPSLNGKMTFPSCLKQPGPRDLPHHCVVNWNKKTSTFYLYLALTPSLTDKGKFLLAARRYRFVTHTEYVISLDADNFSQGSNAYVGKLSSDFLEASFTIYDAPAGAKPSSDRASRRFASKQISPQVPAGNVEAGNISYKKFSLLKPKRPRLMICSLKSPASSICESSGSKSFNRHTMHCKEHATSSGYTILKNKAPMWNEQLECWFLNFHEKKDMTVASVKNFQLVATVDQSQPGGKGDEETVLLQFCKVGGDTFTMYYRQPLSAFHAFAICLTSFGTKLACQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02969 367 Pfam Tub family 98 362 IPR000007 -
Mepo6g02969 367 Pfam F-box domain 42 81 IPR001810 GO:0005515
Mepo6g02969 367 Gene3D Tubby Protein; Chain A 92 367 IPR025659 -
Mepo6g02969 367 PRINTS Tubby superfamily signature 345 367 IPR000007 -
Mepo6g02969 367 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Mepo6g02969 367 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Mepo6g02969 367 PRINTS Tubby superfamily signature 324 343 IPR000007 -
Mepo6g02969 367 PRINTS Tubby superfamily signature 275 292 IPR000007 -
Mepo6g02969 367 PANTHER TUBBY-RELATED 32 365 - -
Mepo6g02969 367 Gene3D - 30 88 - -
Mepo6g02969 367 SUPERFAMILY Tubby C-terminal domain-like 86 367 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02969 Mepo-Chr6 41185518 41187809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02969 1 367 TUB Transcription Factor Family AT1G53320 61.198 1.21e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo6g02969 Tub 1.3e-77 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02969 K19600 - gmx:100808096 507.679