Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02968 ATGTCGTTAAGGAAGGTATTTCGATCTCGAAAATTCTCAAAATCCTTCAAGGAGGTTCAATCAATCGACACCGTCGCCGATGACCGGAGAGGTGAATCGGCGGATGGAACTGATTGGTCTACGATGCTACCGGATCTCCTTACGGAGATAATTAAACGAGTCGACGTTGCCGAGGAACAGTGGCCGCACCGTCAAAACGTTGTCGCTTGTGCCTGCGTGTGTAAACGGTGGAGAGATATTACACGTGAGATTGTTAAGTCACCTCAACGTAACGGCACAATCACTTTTCCTTCTTGTCTTAAACAGCCAGGACCACGTGATCTTCCCCATCATTGTCTTATAAAGCGGAGTAAGAAGACTTCCACATTTTACCTCTATCTCGCCCTTACATCATCATTCTCAGATAAAGGGAAGTTTCTATTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATGTTATATCGCTCGATGCTGATGACTTATCACAAGGAAGCAATGCTTATGTTGGCAAGCTAAGCTCGGACTTTCTTGGCACCAACTTCACAATTTACGACAGCCAGCCGCCCCATAATGGTGCCAAACCATCATGTGCCAGAGCTAGCCGACGTTTTGCCAGCAAACAGATAAGCCCTCAAGTTCCTAATGGTAACTTCGAGGCAGGGGATGTTTCCTACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGATGTGCTCACTAAAGTTTCCTGTCTCATCAATGGGTGAAAGTTCAGATAGCAAGTCTTTTGATGGTCAAAAGATGCACAGTAAAGAACATGCTGCTTCTGCGCACACAATCTTGAAGAACAAAGCTCCAAGGTGGCACGAGCATTTGCAGTGCTGGTGCTTGAACTTCCATGGTCGTGTGACAGTGGCATCTGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCGGGAGGGAAAGGAGATGAAGAAACGGTTCTCCTCCAGTTTGGTAAAGTAGGGGACGATATTTTCACCATGGACTATAGGCAGCCCTTGTCCGCCTTCCAGGCGTTTGCCATTTGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1107 0.4679 MSLRKVFRSRKFSKSFKEVQSIDTVADDRRGESADGTDWSTMLPDLLTEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVKSPQRNGTITFPSCLKQPGPRDLPHHCLIKRSKKTSTFYLYLALTSSFSDKGKFLLAARRYRCGTHTEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSCARASRRFASKQISPQVPNGNFEAGDVSYKFNLLKSRGPRRMMCSLKFPVSSMGESSDSKSFDGQKMHSKEHAASAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02968 368 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Mepo6g02968 368 Pfam Tub family 100 363 IPR000007 -
Mepo6g02968 368 Gene3D - 32 86 - -
Mepo6g02968 368 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Mepo6g02968 368 PRINTS Tubby superfamily signature 219 246 IPR000007 -
Mepo6g02968 368 PRINTS Tubby superfamily signature 278 295 IPR000007 -
Mepo6g02968 368 PRINTS Tubby superfamily signature 346 368 IPR000007 -
Mepo6g02968 368 PRINTS Tubby superfamily signature 296 312 IPR000007 -
Mepo6g02968 368 PRINTS Tubby superfamily signature 325 344 IPR000007 -
Mepo6g02968 368 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Mepo6g02968 368 Pfam F-box domain 44 85 IPR001810 GO:0005515
Mepo6g02968 368 SUPERFAMILY F-box domain 37 82 IPR036047 GO:0005515
Mepo6g02968 368 ProSitePatterns Tub family signature 1. 296 309 IPR018066 -
Mepo6g02968 368 ProSitePatterns Tub family signature 2. 353 368 IPR018066 -
Mepo6g02968 368 PANTHER TUBBY-RELATED 31 366 - -
Mepo6g02968 368 SUPERFAMILY Tubby C-terminal domain-like 90 368 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02968 Mepo-Chr6 41178314 41182962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02968 1 368 TUB Transcription Factor Family AT1G53320 70.712 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo6g02968 Tub 9.5e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02968 K19600 - gmx:100808096 622.854